Analysis of interatomic Contacts of Structural Units in PDB entry:
5C58


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C58 entry

There are 2 chains in PDB entry 5C58 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 113PHE 865
B
 ALA 2ALA 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5C58. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 119Right-handed 310
Helix 2
AA2
A
128 134Right-handed alpha
Helix 3
AA3
A
138 144Right-handed 310
Helix 4
AA4
A
232 236Right-handed 310
Helix 5
AA5
A
542 545Right-handed 310
Helix 6
AA6
A
592 598Right-handed alpha
Helix 7
AA7
A
741 747Right-handed alpha
Helix 8
AA8
B
9 12Right-handed 310
Helix 9
AA9
B
15 28Right-handed alpha
Helix 10
AB1
B
123 129Right-handed 310
Helix 11
AB2
B
130 140Right-handed alpha
Helix 12
AB3
B
144 153Right-handed alpha
Helix 13
AB4
B
165 173Right-handed alpha
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There are 7 sheets in PDB entry 5C58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
203 210anti-parallel
Strand 3
A
224 230anti-parallel
Strand 4
A
174 177parallel
Strand 5
A
180 181anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
163 164anti-parallel
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There are 23 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 252first strand
Strand 2
A
258 267anti-parallel
Strand 3
A
271 282anti-parallel
Strand 4
A
322 335anti-parallel
Strand 5
A
339 354anti-parallel
Strand 6
A
375 390anti-parallel
Strand 7
A
400 414anti-parallel
Strand 8
A
427 448anti-parallel
Strand 9
A
451 470anti-parallel
Strand 10
A
482 497anti-parallel
Strand 11
A
501 525anti-parallel
Strand 12
A
547 571anti-parallel
Strand 13
A
578 589anti-parallel
Strand 14
A
617 631anti-parallel
Strand 15
A
639 652anti-parallel
Strand 16
A
682 695anti-parallel
Strand 17
A
699 709anti-parallel
Strand 18
A
766 773anti-parallel
Strand 19
A
780 789anti-parallel
Strand 20
A
810 819anti-parallel
Strand 21
A
825 831anti-parallel
Strand 22
A
857 864anti-parallel
Strand 23
A
243 252anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 609first strand
Strand 2
A
673 678parallel
Strand 3
A
655 661anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 716first strand
Strand 2
A
749 750anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 726first strand
Strand 2
A
739 740anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
110 122anti-parallel
Strand 3
B
85 96anti-parallel
Strand 4
B
65 75anti-parallel
Strand 5
B
51 58anti-parallel
Strand 6
B
44 46anti-parallel
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