Analysis of interatomic Contacts of Structural Units in PDB entry:
5C78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C78 entry

There are 3 chains in PDB entry 5C78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 564
B
 MET 1LYS 564
C
 MET 1LYS 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 5C78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
10 37Right-handed alpha
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
54 62Right-handed alpha
Helix 5
AA5
A
68 119Right-handed alpha
Helix 6
AA6
A
120 126Right-handed alpha
Helix 7
AA7
A
128 221Right-handed alpha
Helix 8
AA8
A
221 227Right-handed alpha
Helix 9
AA9
A
231 278Right-handed alpha
Helix 10
AB1
A
287 320Right-handed alpha
Helix 11
AB2
A
321 330Right-handed alpha
Helix 12
AB3
A
387 396Right-handed alpha
Helix 13
AB4
A
417 423Right-handed alpha
Helix 14
AB5
A
439 444Right-handed alpha
Helix 15
AB6
A
451 461Right-handed alpha
Helix 16
AB7
A
463 469Right-handed alpha
Helix 17
AB8
A
472 476Right-handed 310
Helix 18
AB9
A
486 502Right-handed alpha
Helix 19
AC1
A
516 531Right-handed alpha
Helix 20
AC2
B
2 9Right-handed alpha
Helix 21
AC3
B
10 37Right-handed alpha
Helix 22
AC4
B
37 45Right-handed alpha
Helix 23
AC5
B
54 62Right-handed alpha
Helix 24
AC6
B
68 118Right-handed alpha
Helix 25
AC7
B
120 126Right-handed alpha
Helix 26
AC8
B
128 137Right-handed alpha
Helix 27
AC9
B
137 221Right-handed alpha
Helix 28
AD1
B
221 227Right-handed alpha
Helix 29
AD2
B
231 278Right-handed alpha
Helix 30
AD3
B
286 320Right-handed alpha
Helix 31
AD4
B
321 330Right-handed alpha
Helix 32
AD5
B
387 396Right-handed alpha
Helix 33
AD6
B
414 423Right-handed alpha
Helix 34
AD7
B
439 444Right-handed alpha
Helix 35
AD8
B
451 461Right-handed alpha
Helix 36
AD9
B
463 468Right-handed alpha
Helix 37
AE1
B
472 476Right-handed 310
Helix 38
AE2
B
486 502Right-handed alpha
Helix 39
AE3
B
516 531Right-handed alpha
Helix 40
AE4
C
2 9Right-handed alpha
Helix 41
AE5
C
10 37Right-handed alpha
Helix 42
AE6
C
37 45Right-handed alpha
Helix 43
AE7
C
54 62Right-handed alpha
Helix 44
AE8
C
68 118Right-handed alpha
Helix 45
AE9
C
120 126Right-handed alpha
Helix 46
AF1
C
128 221Right-handed alpha
Helix 47
AF2
C
221 227Right-handed alpha
Helix 48
AF3
C
231 278Right-handed alpha
Helix 49
AF4
C
286 320Right-handed alpha
Helix 50
AF5
C
321 330Right-handed alpha
Helix 51
AF6
C
387 396Right-handed alpha
Helix 52
AF7
C
417 423Right-handed alpha
Helix 53
AF8
C
439 444Right-handed alpha
Helix 54
AF9
C
451 461Right-handed alpha
Helix 55
AG1
C
463 468Right-handed alpha
Helix 56
AG2
C
472 476Right-handed 310
Helix 57
AG3
C
486 502Right-handed alpha
Helix 58
AG4
C
516 531Right-handed alpha
Helix 59
AG5
D
2 9Right-handed alpha
Helix 60
AG6
D
10 37Right-handed alpha
Helix 61
AG7
D
37 45Right-handed alpha
Helix 62
AG8
D
54 62Right-handed alpha
Helix 63
AG9
D
68 118Right-handed alpha
Helix 64
AH1
D
120 126Right-handed alpha
Helix 65
AH2
D
128 221Right-handed alpha
Helix 66
AH3
D
221 227Right-handed alpha
Helix 67
AH4
D
231 278Right-handed alpha
Helix 68
AH5
D
287 320Right-handed alpha
Helix 69
AH6
D
321 333Right-handed alpha
Helix 70
AH7
D
387 396Right-handed alpha
Helix 71
AH8
D
417 423Right-handed alpha
Helix 72
AH9
D
439 444Right-handed alpha
Helix 73
AI1
D
451 461Right-handed alpha
Helix 74
AI2
D
463 468Right-handed alpha
Helix 75
AI3
D
472 476Right-handed 310
Helix 76
AI4
D
486 502Right-handed alpha
Helix 77
AI5
D
516 531Right-handed alpha
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There are 8 sheets in PDB entry 5C78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 373first strand
Strand 2
A
348 350anti-parallel
Strand 3
A
407 408anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
505 508parallel
Strand 3
A
535 538parallel
Strand 4
A
378 382parallel
Strand 5
A
551 556parallel
Strand 6
A
559 564anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 373first strand
Strand 2
B
348 350anti-parallel
Strand 3
B
407 408anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
425 426first strand
Strand 2
B
505 508parallel
Strand 3
B
535 538parallel
Strand 4
B
378 382parallel
Strand 5
B
551 556parallel
Strand 6
B
559 564anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
371 373first strand
Strand 2
C
348 350anti-parallel
Strand 3
C
407 408anti-parallel
Strand 4
C
411 412anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
425 426first strand
Strand 2
C
505 508parallel
Strand 3
C
535 538parallel
Strand 4
C
378 382parallel
Strand 5
C
551 556parallel
Strand 6
C
559 564anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
371 373first strand
Strand 2
D
348 350anti-parallel
Strand 3
D
407 408anti-parallel
Strand 4
D
411 412anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
425 426first strand
Strand 2
D
505 509parallel
Strand 3
D
535 539parallel
Strand 4
D
378 382parallel
Strand 5
D
551 556parallel
Strand 6
D
559 562anti-parallel
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