Analysis of interatomic Contacts of Structural Units in PDB entry:
5C7L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C7L entry

There are 4 chains in PDB entry 5C7L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 ARG 74SER 223
O
 THR 225GLU 409
R
 ARG 74SER 223
R
 THR 225GLU 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5C7L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
84 98Right-handed alpha
Helix 2
AA2
O
110 120Right-handed alpha
Helix 3
AA3
O
152 156Right-handed 310
Helix 4
AA4
O
157 162Right-handed 310
Helix 5
AA5
O
175 185Right-handed alpha
Helix 6
AA6
O
207 211Right-handed 310
Helix 7
AA7
O
223 241Right-handed alpha
Helix 8
AA8
O
267 272Right-handed 310
Helix 9
AA9
O
284 293Right-handed alpha
Helix 10
AB1
O
294 297Right-handed 310
Helix 11
AB2
O
326 340Right-handed alpha
Helix 12
AB3
O
354 359Right-handed 310
Helix 13
AB4
O
370 372Right-handed 310
Helix 14
AB5
O
389 407Right-handed alpha
Helix 15
AB6
R
84 97Right-handed alpha
Helix 16
AB7
R
110 120Right-handed alpha
Helix 17
AB8
R
152 156Right-handed 310
Helix 18
AB9
R
158 162Right-handed 310
Helix 19
AC1
R
175 180Right-handed alpha
Helix 20
AC2
R
180 186Right-handed alpha
Helix 21
AC3
R
207 211Right-handed 310
Helix 22
AC4
R
223 241Right-handed alpha
Helix 23
AC5
R
267 272Right-handed 310
Helix 24
AC6
R
284 293Right-handed alpha
Helix 25
AC7
R
294 297Right-handed 310
Helix 26
AC8
R
326 340Right-handed alpha
Helix 27
AC9
R
354 359Right-handed 310
Helix 28
AD1
R
389 408Right-handed alpha
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There are 6 sheets in PDB entry 5C7L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
131 134first strand
Strand 2
O
137 140anti-parallel
Strand 3
O
143 148anti-parallel
Strand 4
O
100 105parallel
Strand 5
O
77 81parallel
Strand 6
O
165 168parallel
Strand 7
O
190 192parallel
Strand 8
O
218 220parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
279 281first strand
Strand 2
O
300 307anti-parallel
Strand 3
O
242 252parallel
Strand 4
O
313 321anti-parallel
Strand 5
O
379 386anti-parallel
Strand 6
O
365 368anti-parallel
Strand 7
O
346 349parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
279 281first strand
Strand 2
O
300 307anti-parallel
Strand 3
O
242 252parallel
Strand 4
O
313 321anti-parallel
Strand 5
O
379 386anti-parallel
Strand 6
O
373 376anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
131 134first strand
Strand 2
R
137 140anti-parallel
Strand 3
R
143 148anti-parallel
Strand 4
R
100 105parallel
Strand 5
R
77 81parallel
Strand 6
R
165 168parallel
Strand 7
R
190 192parallel
Strand 8
R
218 220parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
279 282first strand
Strand 2
R
300 307anti-parallel
Strand 3
R
242 252parallel
Strand 4
R
313 321anti-parallel
Strand 5
R
379 386anti-parallel
Strand 6
R
365 368anti-parallel
Strand 7
R
346 349parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
279 282first strand
Strand 2
R
300 307anti-parallel
Strand 3
R
242 252parallel
Strand 4
R
313 321anti-parallel
Strand 5
R
379 386anti-parallel
Strand 6
R
373 376anti-parallel
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