Analysis of interatomic Contacts of Structural Units in PDB entry:
5C7X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C7X entry

There are 6 chains in PDB entry 5C7X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 9	PRO 124
B	SER 9	PRO 124
H	GLN 1	LYS 214
L	ASP 1	PRO 208
M	GLN 1	PRO 213
N	ASP 1	PRO 208

There are 28 helices in PDB entry 5C7X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	29	Right-handed alpha
Helix 2	AA2	A	33	37	Right-handed alpha
Helix 3	AA3	A	54	64	Right-handed alpha
Helix 4	AA4	A	65	66	Right-handed 310
Helix 5	AA5	A	67	72	Right-handed 310
Helix 6	AA6	A	73	88	Right-handed alpha
Helix 7	AA7	A	103	117	Right-handed alpha
Helix 8	AA8	B	13	29	Right-handed alpha
Helix 9	AA9	B	33	38	Right-handed alpha
Helix 10	AB1	B	54	65	Right-handed alpha
Helix 11	AB2	B	67	72	Right-handed 310
Helix 12	AB3	B	73	88	Right-handed alpha
Helix 13	AB4	B	103	117	Right-handed alpha
Helix 14	AB5	H	28	32	Right-handed 310
Helix 15	AB6	H	83	87	Right-handed 310
Helix 16	AB7	H	156	158	Right-handed 310
Helix 17	AB8	H	187	192	Right-handed alpha
Helix 18	AB9	H	201	204	Right-handed 310
Helix 19	AC1	L	79	83	Right-handed 310
Helix 20	AC2	L	121	127	Right-handed alpha
Helix 21	AC3	L	181	188	Right-handed alpha
Helix 22	AC4	M	28	32	Right-handed 310
Helix 23	AC5	M	83	87	Right-handed 310
Helix 24	AC6	M	187	190	Right-handed 310
Helix 25	AC7	M	201	204	Right-handed 310
Helix 26	AC8	N	79	83	Right-handed 310
Helix 27	AC9	N	121	127	Right-handed alpha
Helix 28	AD1	N	181	188	Right-handed alpha

There are 25 sheets in PDB entry 5C7X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	98	102	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	99	102	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	196	200	anti-parallel
Strand 3	H	205	207	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	37	anti-parallel
Strand 5	L	45	46	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	165	166	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	200	206	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	108	111	parallel
Strand 3	M	88	94	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	57	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	108	111	parallel
Strand 3	M	88	94	anti-parallel
Strand 4	M	102	103	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	120	124	first strand
Strand 2	M	135	145	anti-parallel
Strand 3	M	176	185	anti-parallel
Strand 4	M	163	165	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	120	124	first strand
Strand 2	M	135	145	anti-parallel
Strand 3	M	176	185	anti-parallel
Strand 4	M	169	170	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	195	200	first strand
Strand 2	M	205	210	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	92	anti-parallel
Strand 4	N	34	38	anti-parallel
Strand 5	N	45	46	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	92	anti-parallel
Strand 4	N	95	98	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	66	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	118	first strand
Strand 2	N	130	139	anti-parallel
Strand 3	N	172	180	anti-parallel
Strand 4	N	159	161	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	118	first strand
Strand 2	N	130	139	anti-parallel
Strand 3	N	172	180	anti-parallel
Strand 4	N	165	166	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	153	155	first strand
Strand 2	N	145	150	anti-parallel
Strand 3	N	191	197	anti-parallel
Strand 4	N	200	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C7X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C7X