Analysis of interatomic Contacts of Structural Units in PDB entry:
5CAZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CAZ entry

There is 1 chain in PDB entry 5CAZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 64LEU 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 5CAZ. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 223Right-handed alpha
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There are 3 sheets in PDB entry 5CAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
205 209anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
165 170anti-parallel
Strand 5
A
173 180anti-parallel
Strand 6
A
153 160parallel
Strand 7
A
138 145anti-parallel
Strand 8
A
102 108anti-parallel
Strand 9
A
90 96anti-parallel
Strand 10
A
198 201anti-parallel
Strand 11
A
72 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
205 209anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
165 170anti-parallel
Strand 5
A
173 180anti-parallel
Strand 6
A
185 190anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 121first strand
Strand 2
A
124 132anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il