Analysis of interatomic Contacts of Structural Units in PDB entry:
5CCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CCM entry

There is 1 chain in PDB entry 5CCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ILE 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5CCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 94Right-handed alpha
Helix 2
AA2
A
99 115Right-handed alpha
Helix 3
AA3
A
118 122Right-handed 310
Helix 4
AA4
A
125 129Right-handed 310
Helix 5
AA5
A
132 136Right-handed 310
Helix 6
AA6
A
137 155Right-handed alpha
Helix 7
AA7
A
161 165Right-handed 310
Helix 8
AA8
A
170 181Right-handed alpha
Helix 9
AA9
A
200 204Right-handed 310
Helix 10
AB1
A
245 258Right-handed alpha
Helix 11
AB2
A
263 269Right-handed alpha
Helix 12
AB3
A
271 276Right-handed alpha
Helix 13
AB4
A
279 299Right-handed alpha
Helix 14
AB5
A
301 314Right-handed alpha
Helix 15
AB6
A
324 341Right-handed alpha
Helix 16
AB7
A
343 354Right-handed alpha
Helix 17
AB8
A
354 362Right-handed alpha
Helix 18
AB9
A
366 382Right-handed alpha
Helix 19
AC1
A
385 404Right-handed alpha
Helix 20
AC2
A
408 425Right-handed alpha
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There are 5 sheets in PDB entry 5CCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
16 20anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
212 217anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
182 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
69 70anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
236 237parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il