Analysis of interatomic Contacts of Structural Units in PDB entry:
5CGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CGC entry

There is 1 chain in PDB entry 5CGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 568ASN 832
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5CGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
568 576Right-handed alpha
Helix 2
AA2
A
578 604Right-handed alpha
Helix 3
AA3
A
607 612Right-handed alpha
Helix 4
AA4
A
614 631Right-handed alpha
Helix 5
AA5
A
632 634Right-handed 310
Helix 6
AA6
A
641 1011Right-handed alpha
Helix 7
AA7
A
1038 1051Right-handed alpha
Helix 8
AA8
A
1059 1080Right-handed alpha
Helix 9
AA9
A
1084 1091Right-handed alpha
Helix 10
AB1
A
1092 1107Right-handed alpha
Helix 11
AB2
A
1107 1112Right-handed alpha
Helix 12
AB3
A
1114 1123Right-handed alpha
Helix 13
AB4
A
1125 1134Right-handed alpha
Helix 14
AB5
A
1136 1142Right-handed alpha
Helix 15
AB6
A
1142 1156Right-handed alpha
Helix 16
AB7
A
691 715Right-handed alpha
Helix 17
AB8
A
737 761Right-handed alpha
Helix 18
AB9
A
765 793Right-handed alpha
Helix 19
AC1
A
797 818Right-handed alpha
Helix 20
AC2
A
818 828Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5CGC.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1018 1019first strand
Strand 2
A
1025 1027anti-parallel
Strand 3
A
1031 1032anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il