Analysis of interatomic Contacts of Structural Units in PDB entry:
5CP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CP2 entry

There are 4 chains in PDB entry 5CP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 336TRP 575
B
GLU 330TRP 575
P
C 1 C 6
T
G 6 G 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5CP2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
345 350Right-handed alpha
Helix 2
AA2
A
359 367Right-handed alpha
Helix 3
AA3
A
370 379Right-handed alpha
Helix 4
AA4
A
381 385Right-handed 310
Helix 5
AA5
A
389 405Right-handed alpha
Helix 6
AA6
A
415 420Right-handed alpha
Helix 7
AA7
A
443 454Right-handed alpha
Helix 8
AA8
A
495 497Right-handed 310
Helix 9
AA9
A
498 508Right-handed alpha
Helix 10
AB1
A
509 523Right-handed alpha
Helix 11
AB2
A
555 564Right-handed alpha
Helix 12
AB3
A
569 573Right-handed 310
Helix 13
AB4
B
331 340Right-handed alpha
Helix 14
AB5
B
345 355Right-handed alpha
Helix 15
AB6
B
359 367Right-handed alpha
Helix 16
AB7
B
370 379Right-handed alpha
Helix 17
AB8
B
379 385Right-handed alpha
Helix 18
AB9
B
389 407Right-handed alpha
Helix 19
AC1
B
415 420Right-handed alpha
Helix 20
AC2
B
442 454Right-handed alpha
Helix 21
AC3
B
495 497Right-handed 310
Helix 22
AC4
B
498 508Right-handed alpha
Helix 23
AC5
B
509 523Right-handed alpha
Helix 24
AC6
B
555 563Right-handed alpha
Helix 25
AC7
B
569 574Right-handed 310
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There are 8 sheets in PDB entry 5CP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
387 388first strand
Strand 2
A
424 425anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
411 414first strand
Strand 2
A
428 433anti-parallel
Strand 3
A
487 493parallel
Strand 4
A
470 477anti-parallel
Strand 5
A
457 467anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
525 527first strand
Strand 2
A
532 534anti-parallel
Strand 3
A
550 551anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
537 538first strand
Strand 2
A
544 546anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
387 388first strand
Strand 2
B
424 425anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
411 414first strand
Strand 2
B
428 433anti-parallel
Strand 3
B
487 493parallel
Strand 4
B
470 477anti-parallel
Strand 5
B
457 467anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
526 527first strand
Strand 2
B
532 534anti-parallel
Strand 3
B
549 551anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
537 538first strand
Strand 2
B
544 546anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il