Analysis of interatomic Contacts of Structural Units in PDB entry:
5CQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CQW entry

There are 2 chains in PDB entry 5CQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 332
B
 SER 2ALA 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5CQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
26 29Right-handed 310
Helix 3
AA3
A
74 89Right-handed alpha
Helix 4
AA4
A
120 125Right-handed alpha
Helix 5
AA5
A
129 150Right-handed alpha
Helix 6
AA6
A
158 160Right-handed 310
Helix 7
AA7
A
194 198Right-handed 310
Helix 8
AA8
A
199 204Right-handed alpha
Helix 9
AA9
A
211 227Right-handed alpha
Helix 10
AB1
A
237 250Right-handed alpha
Helix 11
AB2
A
251 261Right-handed alpha
Helix 12
AB3
A
268 274Right-handed alpha
Helix 13
AB4
A
280 285Right-handed 310
Helix 14
AB5
A
294 303Right-handed alpha
Helix 15
AB6
A
308 312Right-handed 310
Helix 16
AB7
A
314 320Right-handed alpha
Helix 17
AB8
A
321 323Right-handed 310
Helix 18
AB9
A
324 331Right-handed alpha
Helix 19
AC1
B
20 25Right-handed alpha
Helix 20
AC2
B
26 29Right-handed 310
Helix 21
AC3
B
74 89Right-handed alpha
Helix 22
AC4
B
120 125Right-handed alpha
Helix 23
AC5
B
129 150Right-handed alpha
Helix 24
AC6
B
158 160Right-handed 310
Helix 25
AC7
B
194 198Right-handed 310
Helix 26
AC8
B
199 204Right-handed alpha
Helix 27
AC9
B
211 227Right-handed alpha
Helix 28
AD1
B
237 250Right-handed alpha
Helix 29
AD2
B
251 261Right-handed alpha
Helix 30
AD3
B
268 274Right-handed alpha
Helix 31
AD4
B
280 285Right-handed 310
Helix 32
AD5
B
294 303Right-handed alpha
Helix 33
AD6
B
308 312Right-handed 310
Helix 34
AD7
B
314 320Right-handed alpha
Helix 35
AD8
B
321 323Right-handed 310
Helix 36
AD9
B
324 331Right-handed alpha
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There are 6 sheets in PDB entry 5CQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
97 102parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
63 70anti-parallel
Strand 5
A
51 58anti-parallel
Strand 6
A
39 47anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
97 102parallel
Strand 3
B
109 114anti-parallel
Strand 4
B
63 70anti-parallel
Strand 5
B
51 58anti-parallel
Strand 6
B
39 47anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
170 173anti-parallel
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