Analysis of interatomic Contacts of Structural Units in PDB entry:
5CXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CXB entry

There are 2 chains in PDB entry 5CXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 12GLY 487
B
 PRO 433MET 801
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5CXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
29 32Right-handed 310
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
75 83Right-handed alpha
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
170 174Right-handed 310
Helix 7
AA7
A
263 267Right-handed 310
Helix 8
AA8
A
425 429Right-handed 310
Helix 9
AA9
A
443 448Right-handed alpha
Helix 10
AB1
A
455 459Right-handed 310
Helix 11
AB2
B
434 439Right-handed 310
Helix 12
AB3
B
532 545Right-handed alpha
Helix 13
AB4
B
573 579Right-handed alpha
Helix 14
AB5
B
608 611Right-handed 310
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There are 15 sheets in PDB entry 5CXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
90 97parallel
Strand 4
A
63 67anti-parallel
Strand 5
A
70 71anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 109first strand
Strand 2
A
481 486anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
463 469anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
145 150anti-parallel
Strand 3
A
155 159anti-parallel
Strand 4
A
164 167anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 187first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
199 207anti-parallel
Strand 4
A
213 222anti-parallel
Strand 5
A
285 287parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 234first strand
Strand 2
A
239 244anti-parallel
Strand 3
A
249 253anti-parallel
Strand 4
A
291 293anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 305first strand
Strand 2
A
312 317anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
332 337anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 348first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
367 370anti-parallel
Strand 4
A
382 384anti-parallel
Strand 5
A
433 435parallel
Strand 6
A
422 423anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 396first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
413 417anti-parallel
Strand 4
A
437 441anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 449first strand
Strand 2
B
797 801anti-parallel
Strand 3
B
788 792anti-parallel
Strand 4
B
776 781anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 461first strand
Strand 2
B
467 472anti-parallel
Strand 3
B
476 481anti-parallel
Strand 4
B
487 492anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 504first strand
Strand 2
B
513 517anti-parallel
Strand 3
B
520 524anti-parallel
Strand 4
B
581 586anti-parallel
Strand 5
B
568 570anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
593 596first strand
Strand 2
B
602 606anti-parallel
Strand 3
B
615 619anti-parallel
Strand 4
B
624 626anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
636 641first strand
Strand 2
B
647 652anti-parallel
Strand 3
B
656 660anti-parallel
Strand 4
B
668 670anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
677 682first strand
Strand 2
B
688 693anti-parallel
Strand 3
B
698 702anti-parallel
Strand 4
B
711 713anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
720 725first strand
Strand 2
B
732 737anti-parallel
Strand 3
B
741 748anti-parallel
Strand 4
B
758 766anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il