Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D0K entry

There are 12 chains in PDB entry 5D0K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	MET 147
C	VAL 257	LEU 342
D	SER 0	MET 147
F	GLN 258	LEU 342
G	SER 0	MET 147
I	GLN 258	LEU 342
J	SER 0	MET 147
L	GLN 258	LEU 342
B	MET 1	GLY 76
E	MET 1	GLY 76
H	MET 1	GLY 76
K	MET 1	GLY 76

There are 40 helices in PDB entry 5D0K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	16	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	98	112	Right-handed alpha
Helix 4	AA4	A	120	130	Right-handed alpha
Helix 5	AA5	A	130	146	Right-handed alpha
Helix 6	AA6	C	258	265	Right-handed alpha
Helix 7	AA7	C	318	326	Right-handed alpha
Helix 8	AA8	D	1	16	Right-handed alpha
Helix 9	AA9	D	86	90	Right-handed 310
Helix 10	AB1	D	98	112	Right-handed alpha
Helix 11	AB2	D	120	130	Right-handed alpha
Helix 12	AB3	D	130	147	Right-handed alpha
Helix 13	AB4	F	259	264	Right-handed alpha
Helix 14	AB5	F	318	326	Right-handed alpha
Helix 15	AB6	G	1	16	Right-handed alpha
Helix 16	AB7	G	86	90	Right-handed 310
Helix 17	AB8	G	98	112	Right-handed alpha
Helix 18	AB9	G	120	130	Right-handed alpha
Helix 19	AC1	G	130	146	Right-handed alpha
Helix 20	AC2	I	259	265	Right-handed alpha
Helix 21	AC3	I	318	326	Right-handed alpha
Helix 22	AC4	J	1	16	Right-handed alpha
Helix 23	AC5	J	86	90	Right-handed 310
Helix 24	AC6	J	98	112	Right-handed alpha
Helix 25	AC7	J	120	130	Right-handed alpha
Helix 26	AC8	J	130	146	Right-handed alpha
Helix 27	AC9	L	259	265	Right-handed alpha
Helix 28	AD1	L	318	326	Right-handed alpha
Helix 29	AD2	B	22	35	Right-handed alpha
Helix 30	AD3	B	37	39	Right-handed 310
Helix 31	AD4	B	56	60	Right-handed 310
Helix 32	AD5	E	22	35	Right-handed alpha
Helix 33	AD6	E	37	39	Right-handed 310
Helix 34	AD7	E	56	60	Right-handed 310
Helix 35	AD8	H	22	35	Right-handed alpha
Helix 36	AD9	H	37	39	Right-handed 310
Helix 37	AE1	H	56	60	Right-handed 310
Helix 38	AE2	K	22	35	Right-handed alpha
Helix 39	AE3	K	37	39	Right-handed 310
Helix 40	AE4	K	56	60	Right-handed 310

There are 12 sheets in PDB entry 5D0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	A	29	38	anti-parallel
Strand 3	A	49	55	anti-parallel
Strand 4	A	66	69	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	306	309	anti-parallel
Strand 3	C	315	317	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	26	first strand
Strand 2	D	29	38	anti-parallel
Strand 3	D	49	55	anti-parallel
Strand 4	D	66	69	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	269	first strand
Strand 2	F	306	309	anti-parallel
Strand 3	F	315	317	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	26	first strand
Strand 2	G	29	38	anti-parallel
Strand 3	G	49	55	anti-parallel
Strand 4	G	66	69	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	266	269	first strand
Strand 2	I	306	309	anti-parallel
Strand 3	I	315	317	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	21	26	first strand
Strand 2	J	29	38	anti-parallel
Strand 3	J	49	55	anti-parallel
Strand 4	J	66	69	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	266	269	first strand
Strand 2	L	306	309	anti-parallel
Strand 3	L	315	317	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	66	71	parallel
Strand 4	B	41	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	2	6	anti-parallel
Strand 3	E	66	71	parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	16	first strand
Strand 2	H	2	6	anti-parallel
Strand 3	H	66	71	parallel
Strand 4	H	41	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	16	first strand
Strand 2	K	2	6	anti-parallel
Strand 3	K	66	71	parallel
Strand 4	K	41	45	anti-parallel
Strand 5	K	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D0K

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D0K