Analysis of interatomic Contacts of Structural Units in PDB entry:
5D3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D3E entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 14 chains in PDB entry 5D3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ASP 236
B
 MET -2SER 235
C
 ARG 766GLN 767
C
 VAL 769VAL 794
C
 LEU 796PRO 798
E
 VAL 2SER 235
F
 MET -2SER 235
G
 GLN 767GLN 767
G
 VAL 769VAL 794
G
 LEU 796PRO 798
I
 VAL 2ASP 236
J
 ASP 3THR 234
K
 GLN 767GLN 767
K
 VAL 769LEU 770
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 5D3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
19 32Right-handed alpha
Helix 3
AA3
A
38 72Right-handed alpha
Helix 4
AA4
A
77 107Right-handed alpha
Helix 5
AA5
A
108 112Right-handed 310
Helix 6
AA6
A
116 136Right-handed alpha
Helix 7
AA7
A
139 165Right-handed alpha
Helix 8
AA8
A
169 186Right-handed alpha
Helix 9
AA9
A
189 207Right-handed alpha
Helix 10
AB1
A
208 211Right-handed 310
Helix 11
AB2
A
216 236Right-handed alpha
Helix 12
AB3
B
3 17Right-handed alpha
Helix 13
AB4
B
19 33Right-handed alpha
Helix 14
AB5
B
38 74Right-handed alpha
Helix 15
AB6
B
75 107Right-handed alpha
Helix 16
AB7
B
107 112Right-handed alpha
Helix 17
AB8
B
116 138Right-handed alpha
Helix 18
AB9
B
139 165Right-handed alpha
Helix 19
AC1
B
169 186Right-handed alpha
Helix 20
AC2
B
189 207Right-handed alpha
Helix 21
AC3
B
208 211Right-handed 310
Helix 22
AC4
B
215 235Right-handed alpha
Helix 23
AC5
E
3 17Right-handed alpha
Helix 24
AC6
E
19 32Right-handed alpha
Helix 25
AC7
E
38 70Right-handed alpha
Helix 26
AC8
E
75 107Right-handed alpha
Helix 27
AC9
E
116 137Right-handed alpha
Helix 28
AD1
E
139 165Right-handed alpha
Helix 29
AD2
E
169 186Right-handed alpha
Helix 30
AD3
E
189 207Right-handed alpha
Helix 31
AD4
E
208 211Right-handed 310
Helix 32
AD5
E
215 235Right-handed alpha
Helix 33
AD6
F
-2 2Right-handed 310
Helix 34
AD7
F
3 17Right-handed alpha
Helix 35
AD8
F
19 33Right-handed alpha
Helix 36
AD9
F
38 70Right-handed alpha
Helix 37
AE1
F
75 107Right-handed alpha
Helix 38
AE2
F
116 136Right-handed alpha
Helix 39
AE3
F
139 165Right-handed alpha
Helix 40
AE4
F
169 186Right-handed alpha
Helix 41
AE5
F
189 207Right-handed alpha
Helix 42
AE6
F
208 211Right-handed 310
Helix 43
AE7
F
215 235Right-handed alpha
Helix 44
AE8
I
3 18Right-handed alpha
Helix 45
AE9
I
19 34Right-handed alpha
Helix 46
AF1
I
38 74Right-handed alpha
Helix 47
AF2
I
75 107Right-handed alpha
Helix 48
AF3
I
116 136Right-handed alpha
Helix 49
AF4
I
139 165Right-handed alpha
Helix 50
AF5
I
169 186Right-handed alpha
Helix 51
AF6
I
189 206Right-handed alpha
Helix 52
AF7
I
207 211Right-handed 310
Helix 53
AF8
I
215 235Right-handed alpha
Helix 54
AF9
J
4 17Right-handed alpha
Helix 55
AG1
J
19 32Right-handed alpha
Helix 56
AG2
J
38 74Right-handed alpha
Helix 57
AG3
J
76 78Right-handed 310
Helix 58
AG4
J
79 107Right-handed alpha
Helix 59
AG5
J
117 135Right-handed alpha
Helix 60
AG6
J
140 165Right-handed alpha
Helix 61
AG7
J
169 186Right-handed alpha
Helix 62
AG8
J
189 206Right-handed alpha
Helix 63
AG9
J
218 234Right-handed alpha
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There are no sheets in PDB entry 5D3E
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