Analysis of interatomic Contacts of Structural Units in PDB entry:
5D41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D41 entry

There are 2 chains in PDB entry 5D41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 698ASP 1014
B
 GLN 701ASP 1014
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5D41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
700 704Right-handed 310
Helix 2
AA2
A
708 710Right-handed 310
Helix 3
AA3
A
752 767Right-handed alpha
Helix 4
AA4
A
797 805Right-handed alpha
Helix 5
AA5
A
810 831Right-handed alpha
Helix 6
AA6
A
839 841Right-handed 310
Helix 7
AA7
A
877 881Right-handed 310
Helix 8
AA8
A
882 889Right-handed alpha
Helix 9
AA9
A
892 909Right-handed alpha
Helix 10
AB1
A
919 921Right-handed 310
Helix 11
AB2
A
922 929Right-handed alpha
Helix 12
AB3
A
940 951Right-handed alpha
Helix 13
AB4
A
954 958Right-handed 310
Helix 14
AB5
A
960 974Right-handed alpha
Helix 15
AB6
A
974 979Right-handed alpha
Helix 16
AB7
A
983 987Right-handed 310
Helix 17
AB8
A
991 1003Right-handed alpha
Helix 18
AB9
B
708 710Right-handed 310
Helix 19
AC1
B
752 769Right-handed alpha
Helix 20
AC2
B
797 805Right-handed alpha
Helix 21
AC3
B
810 831Right-handed alpha
Helix 22
AC4
B
839 841Right-handed 310
Helix 23
AC5
B
877 881Right-handed 310
Helix 24
AC6
B
882 889Right-handed alpha
Helix 25
AC7
B
892 909Right-handed alpha
Helix 26
AC8
B
919 921Right-handed 310
Helix 27
AC9
B
922 929Right-handed alpha
Helix 28
AD1
B
940 951Right-handed alpha
Helix 29
AD2
B
954 958Right-handed 310
Helix 30
AD3
B
960 974Right-handed alpha
Helix 31
AD4
B
975 978Right-handed 310
Helix 32
AD5
B
983 987Right-handed 310
Helix 33
AD6
B
991 1003Right-handed alpha
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There are 4 sheets in PDB entry 5D41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 706first strand
Strand 2
A
779 781parallel
Strand 3
A
787 790anti-parallel
Strand 4
A
740 747anti-parallel
Strand 5
A
724 731anti-parallel
Strand 6
A
712 720anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 847first strand
Strand 2
A
850 853anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
705 706first strand
Strand 2
B
779 782parallel
Strand 3
B
786 791anti-parallel
Strand 4
B
740 747anti-parallel
Strand 5
B
724 731anti-parallel
Strand 6
B
712 720anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
843 847first strand
Strand 2
B
850 853anti-parallel
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