Analysis of interatomic Contacts of Structural Units in PDB entry:
5D4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D4B entry

There are 6 chains in PDB entry 5D4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 149ALA 510
B
 LYS 149ALA 510
C
 A 1 C 6
D
 A 1 C 6
E
 A 1 C 6
F
 T 1 G 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5D4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 157Right-handed 310
Helix 2
AA2
A
165 182Right-handed alpha
Helix 3
AA3
A
185 201Right-handed alpha
Helix 4
AA4
A
207 212Right-handed 310
Helix 5
AA5
A
218 232Right-handed alpha
Helix 6
AA6
A
234 243Right-handed alpha
Helix 7
AA7
A
243 254Right-handed alpha
Helix 8
AA8
A
259 269Right-handed alpha
Helix 9
AA9
A
273 280Right-handed alpha
Helix 10
AB1
A
286 295Right-handed alpha
Helix 11
AB2
A
295 301Right-handed alpha
Helix 12
AB3
A
305 323Right-handed alpha
Helix 13
AB4
A
331 336Right-handed alpha
Helix 14
AB5
A
354 372Right-handed alpha
Helix 15
AB6
A
413 415Right-handed 310
Helix 16
AB7
A
439 441Right-handed 310
Helix 17
AB8
A
442 452Right-handed alpha
Helix 18
AB9
A
453 469Right-handed alpha
Helix 19
AC1
A
490 499Right-handed alpha
Helix 20
AC2
A
504 508Right-handed 310
Helix 21
AC3
B
153 157Right-handed 310
Helix 22
AC4
B
165 182Right-handed alpha
Helix 23
AC5
B
184 201Right-handed alpha
Helix 24
AC6
B
218 232Right-handed alpha
Helix 25
AC7
B
234 243Right-handed alpha
Helix 26
AC8
B
243 254Right-handed alpha
Helix 27
AC9
B
259 269Right-handed alpha
Helix 28
AD1
B
273 280Right-handed alpha
Helix 29
AD2
B
286 295Right-handed alpha
Helix 30
AD3
B
295 301Right-handed alpha
Helix 31
AD4
B
305 323Right-handed alpha
Helix 32
AD5
B
332 336Right-handed alpha
Helix 33
AD6
B
354 372Right-handed alpha
Helix 34
AD7
B
413 415Right-handed 310
Helix 35
AD8
B
439 441Right-handed 310
Helix 36
AD9
B
442 452Right-handed alpha
Helix 37
AE1
B
453 467Right-handed alpha
Helix 38
AE2
B
490 499Right-handed alpha
Helix 39
AE3
B
504 508Right-handed 310
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There are 6 sheets in PDB entry 5D4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
340 341anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
343 349anti-parallel
Strand 3
A
428 437parallel
Strand 4
A
402 411anti-parallel
Strand 5
A
375 381anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
477 479anti-parallel
Strand 3
A
484 486anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
340 341anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 331first strand
Strand 2
B
343 349anti-parallel
Strand 3
B
428 437parallel
Strand 4
B
402 411anti-parallel
Strand 5
B
375 381anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 472first strand
Strand 2
B
477 479anti-parallel
Strand 3
B
484 486anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il