Analysis of interatomic Contacts of Structural Units in PDB entry:
5D6X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D6X entry

There are 2 chains in PDB entry 5D6X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 897PRO 1011
B
 GLN 897PRO 1011
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5D6X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
942 946Right-handed 310
Helix 2
AA2
A
950 955Right-handed alpha
Helix 3
AA3
A
999 1003Right-handed 310
Helix 4
AA4
B
942 946Right-handed 310
Helix 5
AA5
B
950 955Right-handed alpha
Helix 6
AA6
B
999 1003Right-handed 310
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There are 4 sheets in PDB entry 5D6X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 908first strand
Strand 2
A
914 932anti-parallel
Strand 3
A
972 990anti-parallel
Strand 4
A
962 966anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 941first strand
Strand 2
A
914 932anti-parallel
Strand 3
A
972 990anti-parallel
Strand 4
A
995 998anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
904 908first strand
Strand 2
B
914 932anti-parallel
Strand 3
B
972 990anti-parallel
Strand 4
B
962 966anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
937 941first strand
Strand 2
B
914 932anti-parallel
Strand 3
B
972 990anti-parallel
Strand 4
B
995 998anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il