Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D7A entry

There are 3 chains in PDB entry 5D7A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11LYS 310
B
 ASP 11ASP 307
C
 ILE 13LYS 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5D7A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
61 77Right-handed alpha
Helix 3
AA3
A
112 119Right-handed alpha
Helix 4
AA4
A
120 124Right-handed 310
Helix 5
AA5
A
126 147Right-handed alpha
Helix 6
AA6
A
196 200Right-handed 310
Helix 7
AA7
A
211 229Right-handed alpha
Helix 8
AA8
A
237 248Right-handed alpha
Helix 9
AA9
A
259 270Right-handed alpha
Helix 10
AB1
A
273 277Right-handed 310
Helix 11
AB2
A
279 285Right-handed alpha
Helix 12
AB3
A
286 291Right-handed alpha
Helix 13
AB4
A
294 309Right-handed alpha
Helix 14
AB5
B
14 18Right-handed 310
Helix 15
AB6
B
59 61Right-handed 310
Helix 16
AB7
B
62 77Right-handed alpha
Helix 17
AB8
B
112 119Right-handed alpha
Helix 18
AB9
B
126 147Right-handed alpha
Helix 19
AC1
B
211 229Right-handed alpha
Helix 20
AC2
B
237 248Right-handed alpha
Helix 21
AC3
B
259 270Right-handed alpha
Helix 22
AC4
B
279 285Right-handed alpha
Helix 23
AC5
B
286 291Right-handed alpha
Helix 24
AC6
B
294 307Right-handed alpha
Helix 25
AC7
C
62 77Right-handed alpha
Helix 26
AC8
C
113 119Right-handed alpha
Helix 27
AC9
C
126 147Right-handed alpha
Helix 28
AD1
C
155 157Right-handed 310
Helix 29
AD2
C
211 229Right-handed alpha
Helix 30
AD3
C
237 245Right-handed alpha
Helix 31
AD4
C
259 270Right-handed alpha
Helix 32
AD5
C
279 285Right-handed alpha
Helix 33
AD6
C
286 291Right-handed alpha
Helix 34
AD7
C
294 309Right-handed alpha
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There are 6 sheets in PDB entry 5D7A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 34first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
50 58anti-parallel
Strand 4
A
99 105anti-parallel
Strand 5
A
85 91anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
167 169anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 34first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
50 58anti-parallel
Strand 4
B
99 105anti-parallel
Strand 5
B
85 91anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
167 169anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 32first strand
Strand 2
C
38 44anti-parallel
Strand 3
C
50 58anti-parallel
Strand 4
C
99 105anti-parallel
Strand 5
C
85 91anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
159 161anti-parallel
Strand 3
C
167 169anti-parallel
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