Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D7S entry

There are 2 chains in PDB entry 5D7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLU 3THR 207
H
 GLN 1LYS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5D7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
26 30Right-handed 310
Helix 2
AA2
L
76 80Right-handed 310
Helix 3
AA3
L
119 125Right-handed alpha
Helix 4
AA4
L
179 185Right-handed alpha
Helix 5
AA5
H
28 32Right-handed 310
Helix 6
AA6
H
53 57Right-handed 310
Helix 7
AA7
H
89 93Right-handed 310
Helix 8
AA8
H
160 162Right-handed 310
Helix 9
AA9
H
191 193Right-handed 310
Helix 10
AB1
H
205 208Right-handed 310
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There are 11 sheets in PDB entry 5D7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
99 103parallel
Strand 3
L
81 88anti-parallel
Strand 4
L
33 37anti-parallel
Strand 5
L
44 45anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
99 103parallel
Strand 3
L
81 88anti-parallel
Strand 4
L
93 95anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
67 72anti-parallel
Strand 3
L
59 64anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
112 116first strand
Strand 2
L
128 137anti-parallel
Strand 3
L
170 178anti-parallel
Strand 4
L
157 159anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
112 116first strand
Strand 2
L
128 137anti-parallel
Strand 3
L
170 178anti-parallel
Strand 4
L
163 164anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
151 153first strand
Strand 2
L
143 148anti-parallel
Strand 3
L
189 195anti-parallel
Strand 4
L
198 204anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
111 115parallel
Strand 3
H
94 100anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
60 62anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 131first strand
Strand 2
H
139 149anti-parallel
Strand 3
H
180 189anti-parallel
Strand 4
H
167 169anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 131first strand
Strand 2
H
139 149anti-parallel
Strand 3
H
180 189anti-parallel
Strand 4
H
173 174anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
155 158first strand
Strand 2
H
199 204anti-parallel
Strand 3
H
209 214anti-parallel
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