Analysis of interatomic Contacts of Structural Units in PDB entry:
5D9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D9K entry

There are 2 chains in PDB entry 5D9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 62PRO 359
B
 LYS 62PRO 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5D9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 66Right-handed 310
Helix 2
AA2
A
108 125Right-handed alpha
Helix 3
AA3
A
155 163Right-handed alpha
Helix 4
AA4
A
166 187Right-handed alpha
Helix 5
AA5
A
195 197Right-handed 310
Helix 6
AA6
A
231 235Right-handed 310
Helix 7
AA7
A
236 241Right-handed alpha
Helix 8
AA8
A
246 264Right-handed alpha
Helix 9
AA9
A
272 283Right-handed alpha
Helix 10
AB1
A
292 303Right-handed alpha
Helix 11
AB2
A
317 323Right-handed alpha
Helix 12
AB3
A
324 328Right-handed 310
Helix 13
AB4
A
331 337Right-handed alpha
Helix 14
AB5
B
64 66Right-handed 310
Helix 15
AB6
B
110 125Right-handed alpha
Helix 16
AB7
B
155 163Right-handed alpha
Helix 17
AB8
B
166 187Right-handed alpha
Helix 18
AB9
B
195 197Right-handed 310
Helix 19
AC1
B
231 235Right-handed 310
Helix 20
AC2
B
236 241Right-handed alpha
Helix 21
AC3
B
246 264Right-handed alpha
Helix 22
AC4
B
272 283Right-handed alpha
Helix 23
AC5
B
292 303Right-handed alpha
Helix 24
AC6
B
317 323Right-handed alpha
Helix 25
AC7
B
324 328Right-handed 310
Helix 26
AC8
B
331 337Right-handed alpha
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There are 6 sheets in PDB entry 5D9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 76first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
142 147anti-parallel
Strand 5
A
133 138anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
199 201anti-parallel
Strand 3
A
207 209anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
214 215anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 76first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
142 147anti-parallel
Strand 5
B
133 138anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
199 201anti-parallel
Strand 3
B
207 209anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
214 216anti-parallel
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