Analysis of interatomic Contacts of Structural Units in PDB entry:
5D9L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D9L entry

There is 1 chain in PDB entry 5D9L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 49PRO 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5D9L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 55Right-handed alpha
Helix 2
AA2
A
64 66Right-handed 310
Helix 3
AA3
A
105 107Right-handed 310
Helix 4
AA4
A
116 121Right-handed alpha
Helix 5
AA5
A
154 163Right-handed alpha
Helix 6
AA6
A
166 187Right-handed alpha
Helix 7
AA7
A
195 197Right-handed 310
Helix 8
AA8
A
231 235Right-handed 310
Helix 9
AA9
A
236 241Right-handed alpha
Helix 10
AB1
A
246 264Right-handed alpha
Helix 11
AB2
A
272 283Right-handed alpha
Helix 12
AB3
A
292 303Right-handed alpha
Helix 13
AB4
A
318 323Right-handed alpha
Helix 14
AB5
A
324 328Right-handed 310
Helix 15
AB6
A
331 337Right-handed alpha
Helix 16
AB7
A
350 354Right-handed 310
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There are 4 sheets in PDB entry 5D9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
133 138parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
96 103anti-parallel
Strand 5
A
81 87anti-parallel
Strand 6
A
68 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
113 114anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
214 216anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
207 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il