Analysis of interatomic Contacts of Structural Units in PDB entry:
5D9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D9Y entry

There are 4 chains in PDB entry 5D9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1132MET 1921
B
 A 1 T 5
B
 G 7 T 12
C
 A 1 T 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5D9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1140 1145Right-handed alpha
Helix 2
AA2
A
1156 1169Right-handed alpha
Helix 3
AA3
A
1237 1256Right-handed alpha
Helix 4
AA4
A
1261 1265Right-handed 310
Helix 5
AA5
A
1315 1341Right-handed alpha
Helix 6
AA6
A
1341 1349Right-handed alpha
Helix 7
AA7
A
1355 1359Right-handed 310
Helix 8
AA8
A
1401 1404Right-handed 310
Helix 9
AA9
A
1431 1442Right-handed alpha
Helix 10
AB1
A
1850 1856Right-handed alpha
Helix 11
AB2
A
1909 1912Right-handed 310
Helix 12
AB3
A
1913 1919Right-handed alpha
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There are 5 sheets in PDB entry 5D9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1153 1154first strand
Strand 2
A
1225 1232anti-parallel
Strand 3
A
1871 1874anti-parallel
Strand 4
A
1393 1399anti-parallel
Strand 5
A
1896 1902anti-parallel
Strand 6
A
1370 1375anti-parallel
Strand 7
A
1283 1288anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1153 1154first strand
Strand 2
A
1225 1232anti-parallel
Strand 3
A
1209 1215anti-parallel
Strand 4
A
1175 1182parallel
Strand 5
A
1421 1423anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1444 1446first strand
Strand 2
A
1198 1200anti-parallel
Strand 3
A
1862 1864parallel
Strand 4
A
1416 1418anti-parallel
Strand 5
A
1882 1883anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1291 1292first strand
Strand 2
A
1297 1298anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1451 1457first strand
Strand 2
A
1843 1849anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il