Analysis of interatomic Contacts of Structural Units in PDB entry:
5DCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DCF entry

There is 1 chain in PDB entry 5DCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2PHE 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5DCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
20 37Right-handed alpha
Helix 3
AA3
A
39 44Right-handed alpha
Helix 4
AA4
A
45 46Right-handed 310
Helix 5
AA5
A
47 49Right-handed 310
Helix 6
AA6
A
63 65Right-handed 310
Helix 7
AA7
A
73 87Right-handed alpha
Helix 8
AA8
A
87 93Right-handed alpha
Helix 9
AA9
A
110 125Right-handed alpha
Helix 10
AB1
A
133 149Right-handed alpha
Helix 11
AB2
A
152 160Right-handed alpha
Helix 12
AB3
A
165 183Right-handed alpha
Helix 13
AB4
A
216 228Right-handed alpha
Helix 14
AB5
A
231 239Right-handed alpha
Helix 15
AB6
A
242 257Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5DCF.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
57 61anti-parallel
Strand 3
A
67 71anti-parallel
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