Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DFV entry

There are 6 chains in PDB entry 5DFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 113	HIS 202
B	PHE 113	HIS 202
C	GLN 101	ARG 1099
D	ASP 501	GLU 2105
E	GLN 101	ARG 1099
F	ASP 501	GLU 2105

There are 25 helices in PDB entry 5DFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	115	137	Right-handed alpha
Helix 2	AA2	A	140	155	Right-handed alpha
Helix 3	AA3	A	162	172	Right-handed alpha
Helix 4	AA4	A	184	188	Right-handed 310
Helix 5	AA5	A	189	199	Right-handed alpha
Helix 6	AA6	B	115	137	Right-handed alpha
Helix 7	AA7	B	140	155	Right-handed alpha
Helix 8	AA8	B	159	161	Right-handed 310
Helix 9	AA9	B	162	172	Right-handed alpha
Helix 10	AB1	B	182	188	Right-handed 310
Helix 11	AB2	B	189	200	Right-handed alpha
Helix 12	AB3	C	153	156	Right-handed 310
Helix 13	AB4	C	321	325	Right-handed 310
Helix 14	AB5	C	1042	1044	Right-handed 310
Helix 15	AB6	C	1086	1089	Right-handed 310
Helix 16	AB7	D	725	729	Right-handed 310
Helix 17	AB8	D	2013	2019	Right-handed alpha
Helix 18	AB9	D	2074	2079	Right-handed alpha
Helix 19	AC1	E	153	156	Right-handed 310
Helix 20	AC2	E	295	298	Right-handed 310
Helix 21	AC3	E	321	325	Right-handed 310
Helix 22	AC4	E	1086	1089	Right-handed 310
Helix 23	AC5	F	725	729	Right-handed 310
Helix 24	AC6	F	2013	2019	Right-handed alpha
Helix 25	AC7	F	2075	2081	Right-handed alpha

There are 21 sheets in PDB entry 5DFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	118	125	anti-parallel
Strand 3	C	312	317	anti-parallel
Strand 4	C	302	307	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	405	409	parallel
Strand 3	C	326	332	anti-parallel
Strand 4	C	197	204	anti-parallel
Strand 5	C	211	253	anti-parallel
Strand 6	C	291	293	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	405	409	parallel
Strand 3	C	326	332	anti-parallel
Strand 4	C	399	401	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1010	first strand
Strand 2	C	1023	1031	anti-parallel
Strand 3	C	1061	1068	anti-parallel
Strand 4	C	1049	1051	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1010	first strand
Strand 2	C	1023	1031	anti-parallel
Strand 3	C	1061	1068	anti-parallel
Strand 4	C	1055	1056	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1037	1040	first strand
Strand 2	C	1080	1085	anti-parallel
Strand 3	C	1090	1095	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	504	507	first strand
Strand 2	D	519	552	anti-parallel
Strand 3	D	716	721	anti-parallel
Strand 4	D	706	711	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	510	513	first strand
Strand 2	D	805	809	parallel
Strand 3	D	731	752	anti-parallel
Strand 4	D	598	604	anti-parallel
Strand 5	D	611	615	anti-parallel
Strand 6	D	696	697	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2006	2010	first strand
Strand 2	D	2022	2031	anti-parallel
Strand 3	D	2065	2073	anti-parallel
Strand 4	D	2051	2053	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2037	2042	first strand
Strand 2	D	2084	2089	anti-parallel
Strand 3	D	2100	2101	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	106	first strand
Strand 2	E	118	125	anti-parallel
Strand 3	E	312	317	anti-parallel
Strand 4	E	302	307	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	112	first strand
Strand 2	E	405	409	parallel
Strand 3	E	326	332	anti-parallel
Strand 4	E	197	204	anti-parallel
Strand 5	E	211	253	anti-parallel
Strand 6	E	291	293	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	112	first strand
Strand 2	E	405	409	parallel
Strand 3	E	326	332	anti-parallel
Strand 4	E	399	401	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1006	1010	first strand
Strand 2	E	1022	1031	anti-parallel
Strand 3	E	1060	1069	anti-parallel
Strand 4	E	1049	1051	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1006	1010	first strand
Strand 2	E	1022	1031	anti-parallel
Strand 3	E	1060	1069	anti-parallel
Strand 4	E	1055	1057	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1037	1040	first strand
Strand 2	E	1080	1085	anti-parallel
Strand 3	E	1090	1095	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	504	507	first strand
Strand 2	F	519	552	anti-parallel
Strand 3	F	716	721	anti-parallel
Strand 4	F	706	711	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	510	514	first strand
Strand 2	F	805	810	parallel
Strand 3	F	730	752	anti-parallel
Strand 4	F	598	604	anti-parallel
Strand 5	F	611	615	anti-parallel
Strand 6	F	696	697	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	510	514	first strand
Strand 2	F	805	810	parallel
Strand 3	F	730	752	anti-parallel
Strand 4	F	799	801	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2008	2010	first strand
Strand 2	F	2021	2031	anti-parallel
Strand 3	F	2065	2074	anti-parallel
Strand 4	F	2051	2055	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2045	2046	first strand
Strand 2	F	2036	2042	anti-parallel
Strand 3	F	2083	2090	anti-parallel
Strand 4	F	2097	2102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DFV