Analysis of interatomic Contacts of Structural Units in PDB entry:
5DG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DG3 entry

There are 6 chains in PDB entry 5DG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	ARG 258
B	SER 2	ARG 258
C	LEU 3	ARG 258
D	LEU 3	ARG 258
E	LEU 3	ARG 258
F	SER 2	ARG 258

There are 25 helices in PDB entry 5DG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	194	201	Right-handed alpha
Helix 2	AA2	A	204	220	Right-handed alpha
Helix 3	AA3	A	224	239	Right-handed alpha
Helix 4	AA4	A	239	251	Right-handed alpha
Helix 5	AA5	B	194	201	Right-handed alpha
Helix 6	AA6	B	204	220	Right-handed alpha
Helix 7	AA7	B	224	239	Right-handed alpha
Helix 8	AA8	B	239	251	Right-handed alpha
Helix 9	AA9	C	194	201	Right-handed alpha
Helix 10	AB1	C	204	220	Right-handed alpha
Helix 11	AB2	C	224	239	Right-handed alpha
Helix 12	AB3	C	239	251	Right-handed alpha
Helix 13	AB4	D	194	201	Right-handed alpha
Helix 14	AB5	D	204	220	Right-handed alpha
Helix 15	AB6	D	224	232	Right-handed alpha
Helix 16	AB7	D	232	239	Right-handed alpha
Helix 17	AB8	D	239	251	Right-handed alpha
Helix 18	AB9	E	194	200	Right-handed alpha
Helix 19	AC1	E	204	220	Right-handed alpha
Helix 20	AC2	E	224	239	Right-handed alpha
Helix 21	AC3	E	239	251	Right-handed alpha
Helix 22	AC4	F	194	202	Right-handed alpha
Helix 23	AC5	F	204	220	Right-handed alpha
Helix 24	AC6	F	224	239	Right-handed alpha
Helix 25	AC7	F	239	251	Right-handed alpha

There are 18 sheets in PDB entry 5DG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	27	28	parallel
Strand 3	A	45	46	parallel
Strand 4	A	63	66	parallel
Strand 5	A	93	95	parallel
Strand 6	A	118	119	parallel
Strand 7	A	136	137	parallel
Strand 8	A	154	155	parallel
Strand 9	A	172	173	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	32	34	parallel
Strand 3	A	50	52	parallel
Strand 4	A	79	82	parallel
Strand 5	A	104	107	parallel
Strand 6	A	124	125	parallel
Strand 7	A	142	143	parallel
Strand 8	A	160	161	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	39	40	parallel
Strand 3	A	57	58	parallel
Strand 4	A	87	88	parallel
Strand 5	A	112	113	parallel
Strand 6	A	130	131	parallel
Strand 7	A	148	149	parallel
Strand 8	A	166	167	parallel
Strand 9	A	181	184	parallel
Strand 10	A	189	193	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	10	first strand
Strand 2	B	27	28	parallel
Strand 3	B	45	46	parallel
Strand 4	B	63	66	parallel
Strand 5	B	93	95	parallel
Strand 6	B	118	119	parallel
Strand 7	B	136	137	parallel
Strand 8	B	154	155	parallel
Strand 9	B	172	173	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	32	34	parallel
Strand 3	B	50	52	parallel
Strand 4	B	79	82	parallel
Strand 5	B	104	107	parallel
Strand 6	B	124	125	parallel
Strand 7	B	142	143	parallel
Strand 8	B	160	161	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	39	40	parallel
Strand 3	B	57	58	parallel
Strand 4	B	87	88	parallel
Strand 5	B	112	113	parallel
Strand 6	B	130	131	parallel
Strand 7	B	148	149	parallel
Strand 8	B	166	167	parallel
Strand 9	B	181	184	parallel
Strand 10	B	189	193	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	10	first strand
Strand 2	C	27	28	parallel
Strand 3	C	45	46	parallel
Strand 4	C	63	66	parallel
Strand 5	C	93	95	parallel
Strand 6	C	118	119	parallel
Strand 7	C	136	137	parallel
Strand 8	C	154	155	parallel
Strand 9	C	172	173	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	32	34	parallel
Strand 3	C	50	52	parallel
Strand 4	C	79	82	parallel
Strand 5	C	104	107	parallel
Strand 6	C	124	125	parallel
Strand 7	C	142	143	parallel
Strand 8	C	160	161	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	39	40	parallel
Strand 3	C	57	58	parallel
Strand 4	C	87	88	parallel
Strand 5	C	112	113	parallel
Strand 6	C	130	131	parallel
Strand 7	C	148	149	parallel
Strand 8	C	166	167	parallel
Strand 9	C	181	184	parallel
Strand 10	C	189	193	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	10	first strand
Strand 2	D	27	28	parallel
Strand 3	D	45	46	parallel
Strand 4	D	63	66	parallel
Strand 5	D	93	95	parallel
Strand 6	D	118	119	parallel
Strand 7	D	136	137	parallel
Strand 8	D	154	155	parallel
Strand 9	D	172	173	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	16	first strand
Strand 2	D	32	34	parallel
Strand 3	D	50	52	parallel
Strand 4	D	79	82	parallel
Strand 5	D	104	107	parallel
Strand 6	D	124	125	parallel
Strand 7	D	142	143	parallel
Strand 8	D	160	161	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	39	40	parallel
Strand 3	D	57	58	parallel
Strand 4	D	87	88	parallel
Strand 5	D	112	113	parallel
Strand 6	D	130	131	parallel
Strand 7	D	148	149	parallel
Strand 8	D	166	167	parallel
Strand 9	D	181	184	parallel
Strand 10	D	189	193	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	10	first strand
Strand 2	E	27	28	parallel
Strand 3	E	45	46	parallel
Strand 4	E	63	66	parallel
Strand 5	E	93	95	parallel
Strand 6	E	118	119	parallel
Strand 7	E	136	137	parallel
Strand 8	E	154	155	parallel
Strand 9	E	172	173	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	32	34	parallel
Strand 3	E	50	52	parallel
Strand 4	E	79	82	parallel
Strand 5	E	104	107	parallel
Strand 6	E	124	125	parallel
Strand 7	E	142	143	parallel
Strand 8	E	160	161	parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	22	first strand
Strand 2	E	39	40	parallel
Strand 3	E	57	58	parallel
Strand 4	E	87	88	parallel
Strand 5	E	112	113	parallel
Strand 6	E	130	131	parallel
Strand 7	E	148	149	parallel
Strand 8	E	166	167	parallel
Strand 9	E	181	184	parallel
Strand 10	E	189	193	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	10	first strand
Strand 2	F	27	28	parallel
Strand 3	F	45	46	parallel
Strand 4	F	63	66	parallel
Strand 5	F	93	95	parallel
Strand 6	F	118	119	parallel
Strand 7	F	136	137	parallel
Strand 8	F	154	155	parallel
Strand 9	F	172	173	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	16	first strand
Strand 2	F	32	34	parallel
Strand 3	F	50	52	parallel
Strand 4	F	79	82	parallel
Strand 5	F	104	107	parallel
Strand 6	F	124	125	parallel
Strand 7	F	142	143	parallel
Strand 8	F	160	161	parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	22	first strand
Strand 2	F	39	40	parallel
Strand 3	F	57	58	parallel
Strand 4	F	87	88	parallel
Strand 5	F	112	113	parallel
Strand 6	F	130	131	parallel
Strand 7	F	148	149	parallel
Strand 8	F	166	167	parallel
Strand 9	F	181	184	parallel
Strand 10	F	189	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DG3