Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DHG entry

There are 2 chains in PDB entry 5DHG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 47ARG 331
B
 LEU 1003PHE 1397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5DHG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 78Right-handed alpha
Helix 2
AA2
A
84 114Right-handed alpha
Helix 3
AA3
A
118 154Right-handed alpha
Helix 4
AA4
A
163 188Right-handed alpha
Helix 5
AA5
A
207 224Right-handed alpha
Helix 6
AA6
A
224 243Right-handed alpha
Helix 7
AA7
A
251 288Right-handed alpha
Helix 8
AA8
A
294 323Right-handed alpha
Helix 9
AA9
A
323 331Right-handed alpha
Helix 10
AB1
B
1004 1020Right-handed alpha
Helix 11
AB2
B
1022 1042Right-handed alpha
Helix 12
AB3
B
1045 1049Right-handed 310
Helix 13
AB4
B
1055 1081Right-handed alpha
Helix 14
AB5
B
1083 1102Right-handed alpha
Helix 15
AB6
B
1111 1142Right-handed alpha
Helix 16
AB7
B
1148 1178Right-handed alpha
Helix 17
AB8
B
1183 1218Right-handed alpha
Helix 18
AB9
B
1218 1226Right-handed alpha
Helix 19
AC1
B
1227 1252Right-handed alpha
Helix 20
AC2
B
1271 1288Right-handed alpha
Helix 21
AC3
B
1288 1306Right-handed alpha
Helix 22
AC4
B
1318 1352Right-handed alpha
Helix 23
AC5
B
1358 1387Right-handed alpha
Helix 24
AC6
B
1387 1397Right-handed alpha
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There are 2 sheets in PDB entry 5DHG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
199 202anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1253 1254first strand
Strand 2
B
1265 1266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il