Analysis of interatomic Contacts of Structural Units in PDB entry:
5DHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DHH entry

There are 2 chains in PDB entry 5DHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 45LYS 332
B
 LEU 1003CYS 1398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5DHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 79Right-handed alpha
Helix 2
AA2
A
84 114Right-handed alpha
Helix 3
AA3
A
120 154Right-handed alpha
Helix 4
AA4
A
163 188Right-handed alpha
Helix 5
AA5
A
207 224Right-handed alpha
Helix 6
AA6
A
224 242Right-handed alpha
Helix 7
AA7
A
251 288Right-handed alpha
Helix 8
AA8
A
294 323Right-handed alpha
Helix 9
AA9
A
323 332Right-handed alpha
Helix 10
AB1
B
1004 1020Right-handed alpha
Helix 11
AB2
B
1022 1042Right-handed alpha
Helix 12
AB3
B
1055 1081Right-handed alpha
Helix 13
AB4
B
1084 1104Right-handed alpha
Helix 14
AB5
B
1111 1143Right-handed alpha
Helix 15
AB6
B
1148 1178Right-handed alpha
Helix 16
AB7
B
1182 1218Right-handed alpha
Helix 17
AB8
B
1218 1226Right-handed alpha
Helix 18
AB9
B
1227 1252Right-handed alpha
Helix 19
AC1
B
1271 1288Right-handed alpha
Helix 20
AC2
B
1288 1306Right-handed alpha
Helix 21
AC3
B
1319 1352Right-handed alpha
Helix 22
AC4
B
1358 1387Right-handed alpha
Helix 23
AC5
B
1387 1398Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5DHH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1253 1254first strand
Strand 2
B
1265 1266anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il