Analysis of interatomic Contacts of Structural Units in PDB entry:
5DIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DIF entry

There are 3 chains in PDB entry 5DIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8LEU 216
B
 ILE 63LYS 200
C
 GLY -1ILE 915
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 5DIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
75 81Right-handed 310
Helix 4
AA4
A
94 100Right-handed alpha
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
138 143Right-handed alpha
Helix 8
AA8
A
158 170Right-handed alpha
Helix 9
AA9
A
190 192Right-handed 310
Helix 10
AB1
A
193 206Right-handed alpha
Helix 11
AB2
B
180 200Right-handed alpha
Helix 12
AB3
C
-1 6Right-handed 310
Helix 13
AB4
C
12 26Right-handed alpha
Helix 14
AB5
C
27 44Right-handed alpha
Helix 15
AB6
C
46 49Right-handed 310
Helix 16
AB7
C
50 58Right-handed alpha
Helix 17
AB8
C
60 78Right-handed alpha
Helix 18
AB9
C
79 82Right-handed 310
Helix 19
AC1
C
83 104Right-handed alpha
Helix 20
AC2
C
104 111Right-handed alpha
Helix 21
AC3
C
111 130Right-handed alpha
Helix 22
AC4
C
136 146Right-handed alpha
Helix 23
AC5
C
148 168Right-handed alpha
Helix 24
AC6
C
175 204Right-handed alpha
Helix 25
AC7
C
206 221Right-handed alpha
Helix 26
AC8
C
226 231Right-handed alpha
Helix 27
AC9
C
233 240Right-handed alpha
Helix 28
AD1
C
240 245Right-handed alpha
Helix 29
AD2
C
245 262Right-handed alpha
Helix 30
AD3
C
268 290Right-handed alpha
Helix 31
AD4
C
296 304Right-handed alpha
Helix 32
AD5
C
307 327Right-handed alpha
Helix 33
AD6
C
327 332Right-handed alpha
Helix 34
AD7
C
333 335Right-handed 310
Helix 35
AD8
C
336 351Right-handed alpha
Helix 36
AD9
C
355 376Right-handed alpha
Helix 37
AE1
C
416 419Right-handed 310
Helix 38
AE2
C
420 434Right-handed alpha
Helix 39
AE3
C
462 479Right-handed alpha
Helix 40
AE4
C
479 496Right-handed alpha
Helix 41
AE5
C
501 515Right-handed alpha
Helix 42
AE6
C
520 542Right-handed alpha
Helix 43
AE7
C
544 562Right-handed alpha
Helix 44
AE8
C
562 569Right-handed alpha
Helix 45
AE9
C
569 584Right-handed alpha
Helix 46
AF1
C
590 607Right-handed alpha
Helix 47
AF2
C
607 612Right-handed alpha
Helix 48
AF3
C
620 628Right-handed alpha
Helix 49
AF4
C
628 633Right-handed alpha
Helix 50
AF5
C
637 653Right-handed alpha
Helix 51
AF6
C
657 669Right-handed alpha
Helix 52
AF7
C
669 686Right-handed alpha
Helix 53
AF8
C
688 691Right-handed 310
Helix 54
AF9
C
692 714Right-handed alpha
Helix 55
AG1
C
717 747Right-handed alpha
Helix 56
AG2
C
748 752Right-handed 310
Helix 57
AG3
C
753 777Right-handed alpha
Helix 58
AG4
C
779 787Right-handed alpha
Helix 59
AG5
C
787 802Right-handed alpha
Helix 60
AG6
C
803 807Right-handed 310
Helix 61
AG7
C
808 823Right-handed alpha
Helix 62
AG8
C
826 846Right-handed alpha
Helix 63
AG9
C
852 870Right-handed alpha
Helix 64
AH1
C
871 876Right-handed alpha
Helix 65
AH2
C
878 894Right-handed alpha
Helix 66
AH3
C
897 919Right-handed alpha
Helix 67
AH4
C
921 945Right-handed alpha
Helix 68
AH5
C
948 950Right-handed 310
Helix 69
AH6
C
951 967Right-handed alpha
Helix 70
AH7
C
986 1003Right-handed alpha
Helix 71
AH8
C
1007 1021Right-handed alpha
Helix 72
AH9
C
1024 1039Right-handed alpha
Helix 73
AI1
C
1045 1051Right-handed 310
Helix 74
AI2
D
383 392Right-handed alpha
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There are 2 sheets in PDB entry 5DIF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 54first strand
Strand 2
A
57 66anti-parallel
Strand 3
A
10 17parallel
Strand 4
A
85 91parallel
Strand 5
A
117 122parallel
Strand 6
A
145 148parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 139first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
102 116anti-parallel
Strand 4
B
83 97anti-parallel
Strand 5
B
170 178anti-parallel
Strand 6
B
155 163anti-parallel
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