Analysis of interatomic Contacts of Structural Units in PDB entry:
5DJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DJU entry

There are 4 chains in PDB entry 5DJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 3PRO 57
A
 GLY 402LEU 546
D
 ASN 3PRO 57
C
 GLY 402LEU 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5DJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
6 18Right-handed alpha
Helix 2
AA2
B
23 37Right-handed alpha
Helix 3
AA3
B
40 54Right-handed alpha
Helix 4
AA4
A
406 411Right-handed 310
Helix 5
AA5
A
431 439Right-handed alpha
Helix 6
AA6
A
441 446Right-handed alpha
Helix 7
AA7
A
449 454Right-handed 310
Helix 8
AA8
A
459 473Right-handed alpha
Helix 9
AA9
A
521 546Right-handed alpha
Helix 10
AB1
D
6 18Right-handed alpha
Helix 11
AB2
D
23 37Right-handed alpha
Helix 12
AB3
D
40 55Right-handed alpha
Helix 13
AB4
C
406 411Right-handed 310
Helix 14
AB5
C
431 439Right-handed alpha
Helix 15
AB6
C
441 445Right-handed 310
Helix 16
AB7
C
449 454Right-handed 310
Helix 17
AB8
C
459 473Right-handed alpha
Helix 18
AB9
C
521 546Right-handed alpha
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There are 2 sheets in PDB entry 5DJU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 430first strand
Strand 2
A
415 418anti-parallel
Strand 3
A
506 516anti-parallel
Strand 4
A
489 500anti-parallel
Strand 5
A
476 483anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
427 430first strand
Strand 2
C
414 418anti-parallel
Strand 3
C
506 516anti-parallel
Strand 4
C
489 500anti-parallel
Strand 5
C
476 483anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il