Analysis of interatomic Contacts of Structural Units in PDB entry:
5DKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DKW entry

There are 8 chains in PDB entry 5DKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 249TRP 575
B
 ALA 249TRP 575
D
 G 1 G 4
P
 C 1 C 6
T
 C 1 G 11
C
 G 1 G 4
E
 C 1 C 6
F
 C 1 G 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5DKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
253 270Right-handed alpha
Helix 2
AA2
A
272 288Right-handed alpha
Helix 3
AA3
A
295 302Right-handed alpha
Helix 4
AA4
A
306 320Right-handed alpha
Helix 5
AA5
A
322 327Right-handed 310
Helix 6
AA6
A
331 340Right-handed alpha
Helix 7
AA7
A
345 355Right-handed alpha
Helix 8
AA8
A
359 367Right-handed alpha
Helix 9
AA9
A
370 379Right-handed alpha
Helix 10
AB1
A
379 385Right-handed alpha
Helix 11
AB2
A
389 404Right-handed alpha
Helix 12
AB3
A
416 419Right-handed 310
Helix 13
AB4
A
443 454Right-handed alpha
Helix 14
AB5
A
495 497Right-handed 310
Helix 15
AB6
A
498 508Right-handed alpha
Helix 16
AB7
A
509 523Right-handed alpha
Helix 17
AB8
A
555 563Right-handed alpha
Helix 18
AB9
A
569 573Right-handed 310
Helix 19
AC1
B
253 270Right-handed alpha
Helix 20
AC2
B
272 288Right-handed alpha
Helix 21
AC3
B
295 301Right-handed alpha
Helix 22
AC4
B
306 319Right-handed alpha
Helix 23
AC5
B
322 327Right-handed 310
Helix 24
AC6
B
331 339Right-handed alpha
Helix 25
AC7
B
345 355Right-handed alpha
Helix 26
AC8
B
359 367Right-handed alpha
Helix 27
AC9
B
370 379Right-handed alpha
Helix 28
AD1
B
379 385Right-handed alpha
Helix 29
AD2
B
389 405Right-handed alpha
Helix 30
AD3
B
416 419Right-handed 310
Helix 31
AD4
B
443 454Right-handed alpha
Helix 32
AD5
B
495 497Right-handed 310
Helix 33
AD6
B
498 508Right-handed alpha
Helix 34
AD7
B
509 523Right-handed alpha
Helix 35
AD8
B
555 562Right-handed alpha
Helix 36
AD9
B
569 573Right-handed 310
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There are 6 sheets in PDB entry 5DKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
424 425anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
428 433anti-parallel
Strand 3
A
487 493parallel
Strand 4
A
470 477anti-parallel
Strand 5
A
457 467anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
532 534anti-parallel
Strand 3
A
550 551anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
424 425anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 415first strand
Strand 2
B
428 433anti-parallel
Strand 3
B
487 493parallel
Strand 4
B
470 477anti-parallel
Strand 5
B
457 467anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
525 527first strand
Strand 2
B
532 534anti-parallel
Strand 3
B
550 551anti-parallel
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