Analysis of interatomic Contacts of Structural Units in PDB entry:
5DM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DM6 entry

There are 30 chains in PDB entry 5DM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	LYS 1	GLY 224
A	ALA 2	LYS 275
B	MET 1	SER 205
C	ALA 2	GLU 198
D	GLN 3	LYS 179
E	GLY 5	LYS 175
F	MET 1	ALA 144
G	LYS 30	LEU 171
H	MET 1	LEU 134
I	HIS 4	GLU 144
J	LYS 6	ALA 141
K	HIS 3	LEU 115
L	ARG 8	GLY 111
M	GLN 2	ALA 110
N	PRO 2	GLN 118
O	ILE 5	ILE 98
P	PHE 8	LYS 134
Q	SER 2	GLN 94
R	PRO 4	THR 113
S	MET 1	ARG 175
T	ALA 2	GLN 85
U	THR 8	GLU 79
V	MET 1	GLN 66
W	MET 1	GLU 55
Z	LYS 3	ALA 59
1	ALA 0	ALA 53
2	MET 1	GLU 47
3	PRO 2	LYS 66
X	G 1	A 2902
Y	C 2	U 123

There are 88 helices in PDB entry 5DM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	93	99	Right-handed alpha
Helix 2	AA2	0	116	122	Right-handed alpha
Helix 3	AA3	0	127	131	Right-handed 310
Helix 4	AA4	A	10	14	Right-handed 310
Helix 5	AA5	A	68	73	Right-handed 310
Helix 6	AA6	A	199	204	Right-handed 310
Helix 7	AA7	A	208	215	Right-handed alpha
Helix 8	AA8	A	222	226	Right-handed 310
Helix 9	AA9	A	227	231	Right-handed 310
Helix 10	AB1	A	264	268	Right-handed 310
Helix 11	AB2	B	38	43	Right-handed alpha
Helix 12	AB3	B	55	59	Right-handed 310
Helix 13	AB4	B	60	70	Right-handed alpha
Helix 14	AB5	B	91	96	Right-handed alpha
Helix 15	AB6	B	115	121	Right-handed alpha
Helix 16	AB7	C	23	37	Right-handed alpha
Helix 17	AB8	C	96	113	Right-handed alpha
Helix 18	AB9	C	129	140	Right-handed alpha
Helix 19	AC1	C	154	162	Right-handed alpha
Helix 20	AC2	C	176	183	Right-handed alpha
Helix 21	AC3	D	4	21	Right-handed alpha
Helix 22	AC4	D	46	62	Right-handed alpha
Helix 23	AC5	D	92	107	Right-handed alpha
Helix 24	AC6	D	142	146	Right-handed 310
Helix 25	AC7	D	162	173	Right-handed alpha
Helix 26	AC8	E	59	80	Right-handed alpha
Helix 27	AC9	E	137	151	Right-handed alpha
Helix 28	AD1	F	40	44	Right-handed 310
Helix 29	AD2	F	119	126	Right-handed alpha
Helix 30	AD3	G	50	64	Right-handed alpha
Helix 31	AD4	G	84	88	Right-handed 310
Helix 32	AD5	G	93	98	Right-handed alpha
Helix 33	AD6	G	115	122	Right-handed alpha
Helix 34	AD7	G	123	134	Right-handed alpha
Helix 35	AD8	G	138	146	Right-handed alpha
Helix 36	AD9	G	158	162	Right-handed 310
Helix 37	AE1	H	116	121	Right-handed alpha
Helix 38	AE2	H	123	130	Right-handed alpha
Helix 39	AE3	I	55	60	Right-handed alpha
Helix 40	AE4	I	77	81	Right-handed alpha
Helix 41	AE5	I	91	98	Right-handed alpha
Helix 42	AE6	I	126	135	Right-handed alpha
Helix 43	AE7	J	45	60	Right-handed alpha
Helix 44	AE8	J	111	125	Right-handed alpha
Helix 45	AE9	K	13	31	Right-handed alpha
Helix 46	AF1	K	38	56	Right-handed alpha
Helix 47	AF2	K	59	70	Right-handed alpha
Helix 48	AF3	K	72	82	Right-handed alpha
Helix 49	AF4	K	82	88	Right-handed alpha
Helix 50	AF5	L	9	19	Right-handed alpha
Helix 51	AF6	L	67	83	Right-handed alpha
Helix 52	AF7	L	98	110	Right-handed alpha
Helix 53	AF8	M	8	19	Right-handed alpha
Helix 54	AF9	M	60	63	Right-handed 310
Helix 55	AG1	M	104	109	Right-handed 310
Helix 56	AG2	N	8	21	Right-handed alpha
Helix 57	AG3	N	25	30	Right-handed 310
Helix 58	AG4	N	31	72	Right-handed alpha
Helix 59	AG5	N	75	86	Right-handed alpha
Helix 60	AG6	N	91	102	Right-handed alpha
Helix 61	AG7	N	102	118	Right-handed alpha
Helix 62	AG8	O	48	54	Right-handed alpha
Helix 63	AG9	P	10	18	Right-handed alpha
Helix 64	AH1	P	34	46	Right-handed alpha
Helix 65	AH2	P	50	57	Right-handed alpha
Helix 66	AH3	P	58	60	Right-handed 310
Helix 67	AH4	P	64	80	Right-handed alpha
Helix 68	AH5	Q	3	6	Right-handed alpha
Helix 69	AH6	Q	13	22	Right-handed alpha
Helix 70	AH7	Q	34	47	Right-handed alpha
Helix 71	AH8	Q	88	93	Right-handed alpha
Helix 72	AH9	R	5	11	Right-handed 310
Helix 73	AI1	R	79	81	Right-handed 310
Helix 74	AI2	S	36	47	Right-handed alpha
Helix 75	AI3	U	63	73	Right-handed alpha
Helix 76	AI4	V	3	8	Right-handed alpha
Helix 77	AI5	V	10	35	Right-handed alpha
Helix 78	AI6	V	39	64	Right-handed alpha
Helix 79	AI7	W	13	23	Right-handed alpha
Helix 80	AI8	W	40	47	Right-handed alpha
Helix 81	AI9	Z	12	20	Right-handed alpha
Helix 82	AJ1	2	8	17	Right-handed alpha
Helix 83	AJ2	2	17	23	Right-handed alpha
Helix 84	AJ3	2	24	38	Right-handed alpha
Helix 85	AJ4	2	43	47	Right-handed 310
Helix 86	AJ5	3	7	11	Right-handed 310
Helix 87	AJ6	3	37	45	Right-handed alpha
Helix 88	AJ7	3	54	62	Right-handed alpha

There are 45 sheets in PDB entry 5DM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	18	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	76	83	anti-parallel
Strand 4	A	116	118	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	141	143	anti-parallel
Strand 4	A	163	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	172	176	anti-parallel
Strand 3	A	182	186	anti-parallel
Strand 4	A	270	272	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	16	first strand
Strand 2	B	19	27	anti-parallel
Strand 3	B	181	185	anti-parallel
Strand 4	B	164	176	anti-parallel
Strand 5	B	101	107	anti-parallel
Strand 6	B	194	199	anti-parallel
Strand 7	B	3	16	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	46	50	anti-parallel
Strand 3	B	78	82	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	158	160	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	185	190	parallel
Strand 3	C	148	152	parallel
Strand 4	C	167	171	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	157	158	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	84	89	anti-parallel
Strand 3	D	36	37	anti-parallel
Strand 4	D	153	154	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	45	first strand
Strand 2	E	50	52	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	124	first strand
Strand 2	E	130	135	anti-parallel
Strand 3	E	83	90	anti-parallel
Strand 4	E	161	164	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	102	105	anti-parallel
Strand 3	E	113	115	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	9	first strand
Strand 2	F	55	59	anti-parallel
Strand 3	F	66	69	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	45	first strand
Strand 2	G	79	83	parallel
Strand 3	G	148	150	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	102	first strand
Strand 2	G	111	114	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	16	23	anti-parallel
Strand 3	H	50	58	anti-parallel
Strand 4	H	72	76	anti-parallel
Strand 5	H	95	98	anti-parallel
Strand 6	H	7	10	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	82	first strand
Strand 2	H	88	91	anti-parallel
Strand 3	M	75	82	anti-parallel
Strand 4	M	65	72	anti-parallel
Strand 5	M	45	58	anti-parallel
Strand 6	M	32	40	anti-parallel
Strand 7	M	88	95	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	76	first strand
Strand 2	I	106	109	parallel
Strand 3	I	124	125	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	121	first strand
Strand 2	I	140	141	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	64	67	first strand
Strand 2	J	103	108	anti-parallel
Strand 3	J	33	37	anti-parallel
Strand 4	J	130	133	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	44	first strand
Strand 2	J	93	96	anti-parallel
Strand 3	J	73	75	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	37	first strand
Strand 2	K	109	114	anti-parallel
Strand 3	K	96	102	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	50	first strand
Strand 2	L	42	44	anti-parallel
Strand 3	L	28	29	anti-parallel
Strand 4	L	88	89	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	6	7	first strand
Strand 2	O	10	11	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	21	23	first strand
Strand 2	O	89	95	anti-parallel
Strand 3	O	55	65	anti-parallel
Strand 4	O	32	36	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	69	75	first strand
Strand 2	O	80	86	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	25	31	first strand
Strand 2	P	122	130	anti-parallel
Strand 3	P	90	99	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	103	108	first strand
Strand 2	P	114	119	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	10	first strand
Strand 2	Q	24	29	anti-parallel
Strand 3	Q	75	82	anti-parallel
Strand 4	Q	50	58	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	62	65	first strand
Strand 2	Q	68	71	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	21	23	first strand
Strand 2	R	33	40	anti-parallel
Strand 3	R	45	48	anti-parallel
Strand 4	R	76	77	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	53	56	first strand
Strand 2	R	69	72	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	95	99	first strand
Strand 2	R	103	107	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	29	35	first strand
Strand 2	S	18	24	anti-parallel
Strand 3	S	77	85	parallel
Strand 4	S	61	72	anti-parallel
Strand 5	S	52	55	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	94	97	first strand
Strand 2	S	119	123	anti-parallel
Strand 3	S	159	160	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	112	114	first strand
Strand 2	S	170	172	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	147	148	first strand
Strand 2	S	167	168	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	22	23	first strand
Strand 2	T	36	39	anti-parallel
Strand 3	T	59	61	anti-parallel
Strand 4	T	51	53	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	46	47	first strand
Strand 2	T	77	82	parallel
Strand 3	T	66	71	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	31	33	first strand
Strand 2	W	2	5	anti-parallel
Strand 3	W	51	53	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	31	32	first strand
Strand 2	Z	39	40	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	21	26	first strand
Strand 2	1	8	14	anti-parallel
Strand 3	1	49	52	anti-parallel
Strand 4	1	36	37	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	15	16	first strand
Strand 2	3	22	24	anti-parallel
Strand 3	3	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DM6