Analysis of interatomic Contacts of Structural Units in PDB entry:
5DO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DO7 entry

There are 4 chains in PDB entry 5DO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 34SER 650
B
LEU 23TRP 673
D
GLN 24PRO 669
C
HIS 36ILE 649
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 5DO7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
91 100Right-handed alpha
Helix 2
AA2
A
124 129Right-handed alpha
Helix 3
AA3
A
143 156Right-handed alpha
Helix 4
AA4
A
162 175Right-handed alpha
Helix 5
AA5
A
177 181Right-handed 310
Helix 6
AA6
A
194 208Right-handed alpha
Helix 7
AA7
A
224 241Right-handed alpha
Helix 8
AA8
A
255 260Right-handed 310
Helix 9
AA9
A
276 287Right-handed alpha
Helix 10
AB1
A
296 306Right-handed alpha
Helix 11
AB2
A
311 332Right-handed alpha
Helix 12
AB3
A
332 348Right-handed alpha
Helix 13
AB4
A
363 381Right-handed alpha
Helix 14
AB5
A
382 405Right-handed alpha
Helix 15
AB6
A
415 428Right-handed alpha
Helix 16
AB7
A
431 454Right-handed alpha
Helix 17
AB8
A
459 491Right-handed alpha
Helix 18
AB9
A
495 506Right-handed alpha
Helix 19
AC1
A
506 524Right-handed alpha
Helix 20
AC2
A
527 546Right-handed alpha
Helix 21
AC3
A
551 555Right-handed 310
Helix 22
AC4
A
556 564Right-handed alpha
Helix 23
AC5
A
566 581Right-handed alpha
Helix 24
AC6
A
605 613Right-handed alpha
Helix 25
AC7
A
615 649Right-handed alpha
Helix 26
AC8
B
110 120Right-handed alpha
Helix 27
AC9
B
140 148Right-handed alpha
Helix 28
AD1
B
162 175Right-handed alpha
Helix 29
AD2
B
180 193Right-handed alpha
Helix 30
AD3
B
206 211Right-handed alpha
Helix 31
AD4
B
214 225Right-handed alpha
Helix 32
AD5
B
226 230Right-handed 310
Helix 33
AD6
B
244 261Right-handed alpha
Helix 34
AD7
B
273 279Right-handed alpha
Helix 35
AD8
B
297 304Right-handed alpha
Helix 36
AD9
B
305 307Right-handed 310
Helix 37
AE1
B
315 321Right-handed alpha
Helix 38
AE2
B
344 366Right-handed alpha
Helix 39
AE3
B
395 413Right-handed alpha
Helix 40
AE4
B
413 435Right-handed alpha
Helix 41
AE5
B
444 458Right-handed alpha
Helix 42
AE6
B
459 473Right-handed alpha
Helix 43
AE7
B
475 484Right-handed alpha
Helix 44
AE8
B
492 500Right-handed alpha
Helix 45
AE9
B
500 519Right-handed alpha
Helix 46
AF1
B
525 553Right-handed alpha
Helix 47
AF2
B
555 574Right-handed alpha
Helix 48
AF3
B
574 579Right-handed alpha
Helix 49
AF4
B
584 592Right-handed alpha
Helix 50
AF5
B
594 609Right-handed alpha
Helix 51
AF6
B
627 633Right-handed alpha
Helix 52
AF7
B
634 638Right-handed 310
Helix 53
AF8
B
641 665Right-handed alpha
Helix 54
AF9
D
110 120Right-handed alpha
Helix 55
AG1
D
140 148Right-handed alpha
Helix 56
AG2
D
162 175Right-handed alpha
Helix 57
AG3
D
180 193Right-handed alpha
Helix 58
AG4
D
214 225Right-handed alpha
Helix 59
AG5
D
226 230Right-handed 310
Helix 60
AG6
D
244 261Right-handed alpha
Helix 61
AG7
D
273 279Right-handed alpha
Helix 62
AG8
D
298 304Right-handed alpha
Helix 63
AG9
D
305 307Right-handed 310
Helix 64
AH1
D
314 321Right-handed alpha
Helix 65
AH2
D
326 335Right-handed alpha
Helix 66
AH3
D
335 348Right-handed alpha
Helix 67
AH4
D
394 413Right-handed alpha
Helix 68
AH5
D
413 435Right-handed alpha
Helix 69
AH6
D
444 458Right-handed alpha
Helix 70
AH7
D
459 473Right-handed alpha
Helix 71
AH8
D
475 484Right-handed alpha
Helix 72
AH9
D
494 500Right-handed alpha
Helix 73
AI1
D
500 519Right-handed alpha
Helix 74
AI2
D
525 553Right-handed alpha
Helix 75
AI3
D
555 574Right-handed alpha
Helix 76
AI4
D
574 579Right-handed alpha
Helix 77
AI5
D
587 593Right-handed 310
Helix 78
AI6
D
594 609Right-handed alpha
Helix 79
AI7
D
627 634Right-handed alpha
Helix 80
AI8
D
641 665Right-handed alpha
Helix 81
AI9
C
90 100Right-handed alpha
Helix 82
AJ1
C
124 129Right-handed alpha
Helix 83
AJ2
C
143 156Right-handed alpha
Helix 84
AJ3
C
162 176Right-handed alpha
Helix 85
AJ4
C
177 181Right-handed 310
Helix 86
AJ5
C
194 206Right-handed alpha
Helix 87
AJ6
C
224 241Right-handed alpha
Helix 88
AJ7
C
256 260Right-handed 310
Helix 89
AJ8
C
276 287Right-handed alpha
Helix 90
AJ9
C
296 306Right-handed alpha
Helix 91
AK1
C
312 332Right-handed alpha
Helix 92
AK2
C
332 345Right-handed alpha
Helix 93
AK3
C
363 381Right-handed alpha
Helix 94
AK4
C
382 405Right-handed alpha
Helix 95
AK5
C
416 428Right-handed alpha
Helix 96
AK6
C
431 454Right-handed alpha
Helix 97
AK7
C
459 491Right-handed alpha
Helix 98
AK8
C
495 506Right-handed alpha
Helix 99
AK9
C
506 524Right-handed alpha
Helix 100
AL1
C
527 546Right-handed alpha
Helix 101
AL2
C
551 555Right-handed 310
Helix 102
AL3
C
556 564Right-handed alpha
Helix 103
AL4
C
566 581Right-handed alpha
Helix 104
AL5
C
605 613Right-handed alpha
Helix 105
AL6
C
615 649Right-handed alpha
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There are 9 sheets in PDB entry 5DO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 77first strand
Strand 2
A
37 45anti-parallel
Strand 3
A
109 115anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
130 132first strand
Strand 2
A
213 217parallel
Strand 3
A
244 248parallel
Strand 4
A
81 86parallel
Strand 5
A
262 267parallel
Strand 6
A
270 275anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
95 96first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
129 134anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 151first strand
Strand 2
B
233 237parallel
Strand 3
B
264 268parallel
Strand 4
B
100 103parallel
Strand 5
B
282 287parallel
Strand 6
B
290 296anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
613 614first strand
Strand 2
B
625 626anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
94 96first strand
Strand 2
D
35 42anti-parallel
Strand 3
D
129 134anti-parallel
Strand 4
D
137 138anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
150 151first strand
Strand 2
D
233 237parallel
Strand 3
D
264 268parallel
Strand 4
D
100 103parallel
Strand 5
D
282 287parallel
Strand 6
D
290 296anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 77first strand
Strand 2
C
37 45anti-parallel
Strand 3
C
109 115anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
130 132first strand
Strand 2
C
213 217parallel
Strand 3
C
244 248parallel
Strand 4
C
81 86parallel
Strand 5
C
262 267parallel
Strand 6
C
270 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il