Analysis of interatomic Contacts of Structural Units in PDB entry:
5DQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DQZ entry

There are 6 chains in PDB entry 5DQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
VAL 15ALA 281
C
THR 2SER 305
A
VAL 15ALA 281
B
THR 2SER 305
G
T 2 T 37
H
T 2 T 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5DQZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
D
45 49Right-handed 310
Helix 2
AA2
D
62 72Right-handed alpha
Helix 3
AA3
D
80 83Right-handed 310
Helix 4
AA4
D
95 108Right-handed alpha
Helix 5
AA5
D
108 125Right-handed alpha
Helix 6
AA6
D
133 156Right-handed alpha
Helix 7
AA7
D
174 199Right-handed alpha
Helix 8
AA8
D
213 224Right-handed alpha
Helix 9
AA9
D
227 239Right-handed alpha
Helix 10
AB1
D
242 258Right-handed alpha
Helix 11
AB2
D
259 274Right-handed alpha
Helix 12
AB3
C
10 14Right-handed 310
Helix 13
AB4
C
45 47Right-handed 310
Helix 14
AB5
C
62 71Right-handed alpha
Helix 15
AB6
C
95 108Right-handed alpha
Helix 16
AB7
C
108 125Right-handed alpha
Helix 17
AB8
C
133 156Right-handed alpha
Helix 18
AB9
C
174 199Right-handed alpha
Helix 19
AC1
C
213 224Right-handed alpha
Helix 20
AC2
C
227 239Right-handed alpha
Helix 21
AC3
C
242 258Right-handed alpha
Helix 22
AC4
C
259 274Right-handed alpha
Helix 23
AC5
A
45 49Right-handed 310
Helix 24
AC6
A
62 72Right-handed alpha
Helix 25
AC7
A
80 83Right-handed 310
Helix 26
AC8
A
95 108Right-handed alpha
Helix 27
AC9
A
108 125Right-handed alpha
Helix 28
AD1
A
133 156Right-handed alpha
Helix 29
AD2
A
174 199Right-handed alpha
Helix 30
AD3
A
213 224Right-handed alpha
Helix 31
AD4
A
227 239Right-handed alpha
Helix 32
AD5
A
242 258Right-handed alpha
Helix 33
AD6
A
259 274Right-handed alpha
Helix 34
AD7
B
10 14Right-handed 310
Helix 35
AD8
B
45 47Right-handed 310
Helix 36
AD9
B
62 71Right-handed alpha
Helix 37
AE1
B
80 82Right-handed 310
Helix 38
AE2
B
95 108Right-handed alpha
Helix 39
AE3
B
108 125Right-handed alpha
Helix 40
AE4
B
133 156Right-handed alpha
Helix 41
AE5
B
174 199Right-handed alpha
Helix 42
AE6
B
213 224Right-handed alpha
Helix 43
AE7
B
227 239Right-handed alpha
Helix 44
AE8
B
242 258Right-handed alpha
Helix 45
AE9
B
259 274Right-handed alpha
Helix 46
AF1
F
12 21Right-handed alpha
Helix 47
AF2
F
36 51Right-handed alpha
Helix 48
AF3
E
12 21Right-handed alpha
Helix 49
AF4
E
36 51Right-handed alpha
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There are 6 sheets in PDB entry 5DQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 20first strand
Strand 2
D
51 54parallel
Strand 3
D
74 78parallel
Strand 4
D
85 89anti-parallel
Strand 5
C
84 89anti-parallel
Strand 6
C
74 78anti-parallel
Strand 7
C
49 54parallel
Strand 8
C
15 20parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
39 44first strand
Strand 2
D
31 36anti-parallel
Strand 3
D
23 28anti-parallel
Strand 4
D
58 61parallel
Strand 5
C
58 61anti-parallel
Strand 6
C
23 28parallel
Strand 7
C
31 35anti-parallel
Strand 8
C
41 43anti-parallel
Strand 9
E
86 91anti-parallel
Strand 10
E
78 83anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 20first strand
Strand 2
A
51 54parallel
Strand 3
A
74 78parallel
Strand 4
A
85 89anti-parallel
Strand 5
B
84 89anti-parallel
Strand 6
B
74 78anti-parallel
Strand 7
B
49 54parallel
Strand 8
B
15 20parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 44first strand
Strand 2
A
31 36anti-parallel
Strand 3
A
23 28anti-parallel
Strand 4
A
58 61parallel
Strand 5
B
58 61anti-parallel
Strand 6
B
23 28parallel
Strand 7
B
31 35anti-parallel
Strand 8
B
41 43anti-parallel
Strand 9
F
86 91anti-parallel
Strand 10
F
78 83anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
24 27first strand
Strand 2
F
30 35anti-parallel
Strand 3
F
2 9anti-parallel
Strand 4
F
55 61anti-parallel
Strand 5
F
68 73anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
24 27first strand
Strand 2
E
30 35anti-parallel
Strand 3
E
2 9anti-parallel
Strand 4
E
55 61anti-parallel
Strand 5
E
68 73anti-parallel
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