Analysis of interatomic Contacts of Structural Units in PDB entry:
5DTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DTM entry

There are 2 chains in PDB entry 5DTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 5PRO 332
B
LYS 4ASN 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5DTM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
33 48Right-handed alpha
Helix 2
AA2
A
48 55Right-handed alpha
Helix 3
AA3
A
56 61Right-handed 310
Helix 4
AA4
A
67 91Right-handed alpha
Helix 5
AA5
A
103 119Right-handed alpha
Helix 6
AA6
A
121 126Right-handed 310
Helix 7
AA7
A
132 136Right-handed 310
Helix 8
AA8
A
139 152Right-handed alpha
Helix 9
AA9
A
167 177Right-handed alpha
Helix 10
AB1
A
188 210Right-handed alpha
Helix 11
AB2
A
225 234Right-handed alpha
Helix 12
AB3
A
246 258Right-handed alpha
Helix 13
AB4
A
286 289Right-handed 310
Helix 14
AB5
A
319 331Right-handed alpha
Helix 15
AB6
B
33 48Right-handed alpha
Helix 16
AB7
B
48 55Right-handed alpha
Helix 17
AB8
B
56 61Right-handed 310
Helix 18
AB9
B
67 92Right-handed alpha
Helix 19
AC1
B
103 119Right-handed alpha
Helix 20
AC2
B
121 126Right-handed 310
Helix 21
AC3
B
132 136Right-handed 310
Helix 22
AC4
B
139 151Right-handed alpha
Helix 23
AC5
B
167 177Right-handed alpha
Helix 24
AC6
B
188 210Right-handed alpha
Helix 25
AC7
B
225 234Right-handed alpha
Helix 26
AC8
B
246 258Right-handed alpha
Helix 27
AC9
B
286 289Right-handed 310
Helix 28
AD1
B
319 330Right-handed alpha
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There are 6 sheets in PDB entry 5DTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
6 9first strand
Strand 2
A
18 21anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
26 28first strand
Strand 2
A
31 32anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
216 220first strand
Strand 2
A
181 186parallel
Strand 3
A
158 162parallel
Strand 4
A
237 240parallel
Strand 5
A
265 268parallel
Strand 6
A
312 317anti-parallel
Strand 7
A
291 296anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 9first strand
Strand 2
B
18 21anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
26 28first strand
Strand 2
B
31 32anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
216 220first strand
Strand 2
B
181 186parallel
Strand 3
B
158 162parallel
Strand 4
B
237 240parallel
Strand 5
B
265 268parallel
Strand 6
B
312 317anti-parallel
Strand 7
B
291 296anti-parallel
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