Analysis of interatomic Contacts of Structural Units in PDB entry:
5DY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DY4 entry

There is 1 chain in PDB entry 5DY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 53SER 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5DY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 73Right-handed alpha
Helix 2
AA2
A
85 92Right-handed 310
Helix 3
AA3
A
103 108Right-handed alpha
Helix 4
AA4
A
109 111Right-handed 310
Helix 5
AA5
A
114 119Right-handed 310
Helix 6
AA6
A
120 127Right-handed alpha
Helix 7
AA7
A
128 139Right-handed alpha
Helix 8
AA8
A
146 158Right-handed alpha
Helix 9
AA9
A
171 176Right-handed alpha
Helix 10
AB1
A
179 181Right-handed 310
Helix 11
AB2
A
206 216Right-handed alpha
Helix 12
AB3
A
240 254Right-handed alpha
Helix 13
AB4
A
268 273Right-handed alpha
Helix 14
AB5
A
274 276Right-handed 310
Helix 15
AB6
A
300 304Right-handed 310
Helix 16
AB7
A
323 336Right-handed alpha
Helix 17
AB8
A
337 355Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5DY4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
161 166parallel
Strand 3
A
79 83parallel
Strand 4
A
256 260parallel
Strand 5
A
282 286parallel
Strand 6
A
317 321parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
188 195anti-parallel
Strand 3
A
228 232anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il