Analysis of interatomic Contacts of Structural Units in PDB entry:
5DYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DYG entry

There is 1 chain in PDB entry 5DYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15ASN 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5DYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 50Right-handed alpha
Helix 2
AA2
A
85 93Right-handed alpha
Helix 3
AA3
A
120 124Right-handed 310
Helix 4
AA4
A
129 140Right-handed alpha
Helix 5
AA5
A
190 194Right-handed 310
Helix 6
AA6
A
202 206Right-handed 310
Helix 7
AA7
A
209 226Right-handed alpha
Helix 8
AA8
A
228 233Right-handed alpha
Helix 9
AA9
A
250 263Right-handed alpha
Helix 10
AB1
A
271 276Right-handed alpha
Helix 11
AB2
A
280 296Right-handed alpha
Helix 12
AB3
A
305 309Right-handed 310
Helix 13
AB4
A
318 334Right-handed alpha
Helix 14
AB5
A
335 338Right-handed 310
Helix 15
AB6
A
354 359Right-handed 310
Helix 16
AB7
A
373 386Right-handed alpha
Helix 17
AB8
A
395 403Right-handed alpha
Helix 18
AB9
A
407 433Right-handed alpha
Helix 19
AC1
A
438 445Right-handed alpha
Helix 20
AC2
A
448 457Right-handed alpha
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There are 5 sheets in PDB entry 5DYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
81 84parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
66 73parallel
Strand 5
A
56 60anti-parallel
Strand 6
A
99 104anti-parallel
Strand 7
A
25 30anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
113 118anti-parallel
Strand 4
A
181 183parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
173 176anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
299 304parallel
Strand 3
A
341 347parallel
Strand 4
A
240 244parallel
Strand 5
A
365 368parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
446 447parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il