Analysis of interatomic Contacts of Structural Units in PDB entry:
5DZZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DZZ entry

There is 1 chain in PDB entry 5DZZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 1960GLU 2448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5DZZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
1962 1965Right-handed 310
Helix 2
AA2
A
1977 1983Right-handed alpha
Helix 3
AA3
A
1987 1997Right-handed alpha
Helix 4
AA4
A
2000 2006Right-handed alpha
Helix 5
AA5
A
2008 2013Right-handed alpha
Helix 6
AA6
A
2030 2037Right-handed alpha
Helix 7
AA7
A
2041 2055Right-handed alpha
Helix 8
AA8
A
2068 2075Right-handed alpha
Helix 9
AA9
A
2082 2095Right-handed alpha
Helix 10
AB1
A
2106 2113Right-handed alpha
Helix 11
AB2
A
2117 2130Right-handed alpha
Helix 12
AB3
A
2144 2151Right-handed alpha
Helix 13
AB4
A
2155 2162Right-handed alpha
Helix 14
AB5
A
2182 2188Right-handed alpha
Helix 15
AB6
A
2219 2225Right-handed alpha
Helix 16
AB7
A
2229 2238Right-handed alpha
Helix 17
AB8
A
2242 2250Right-handed alpha
Helix 18
AB9
A
2250 2255Right-handed alpha
Helix 19
AC1
A
2273 2281Right-handed alpha
Helix 20
AC2
A
2284 2297Right-handed alpha
Helix 21
AC3
A
2311 2318Right-handed alpha
Helix 22
AC4
A
2325 2333Right-handed alpha
Helix 23
AC5
A
2333 2338Right-handed alpha
Helix 24
AC6
A
2349 2356Right-handed alpha
Helix 25
AC7
A
2360 2373Right-handed alpha
Helix 26
AC8
A
2389 2394Right-handed alpha
Helix 27
AC9
A
2398 2407Right-handed alpha
Helix 28
AD1
A
2425 2431Right-handed alpha
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There are 12 sheets in PDB entry 5DZZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1967 1969first strand
Strand 2
A
1974 1976anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2018 2021first strand
Strand 2
A
2199 2201parallel
Strand 3
A
2190 2192anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2058 2059first strand
Strand 2
A
2066 2067anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2096 2097first strand
Strand 2
A
2104 2105anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2134 2136first strand
Strand 2
A
2141 2143anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2172 2173first strand
Strand 2
A
2180 2181anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2209 2211first strand
Strand 2
A
2216 2218anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2270 2272first strand
Strand 2
A
2260 2265anti-parallel
Strand 3
A
2442 2446parallel
Strand 4
A
2434 2435anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2301 2303first strand
Strand 2
A
2308 2310anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2339 2340first strand
Strand 2
A
2347 2348anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2377 2379first strand
Strand 2
A
2384 2386anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2415 2417first strand
Strand 2
A
2422 2424anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il