Analysis of interatomic Contacts of Structural Units in PDB entry:
5E0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E0T entry

There are 3 chains in PDB entry 5E0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ILE 255
B
MET 1GLU 259
C
MET 1GLU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5E0T. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
55 57Right-handed 310
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
141 155Right-handed alpha
Helix 5
AA5
A
209 216Right-handed alpha
Helix 6
AA6
A
217 222Right-handed 310
Helix 7
AA7
B
9 21Right-handed alpha
Helix 8
AA8
B
55 57Right-handed 310
Helix 9
AA9
B
72 81Right-handed alpha
Helix 10
AB1
B
141 155Right-handed alpha
Helix 11
AB2
B
209 216Right-handed alpha
Helix 12
AB3
B
217 222Right-handed 310
Helix 13
AB4
C
9 21Right-handed alpha
Helix 14
AB5
C
55 57Right-handed 310
Helix 15
AB6
C
72 81Right-handed alpha
Helix 16
AB7
C
141 152Right-handed alpha
Helix 17
AB8
C
209 216Right-handed alpha
Helix 18
AB9
C
217 222Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5E0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
59 62first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
110 117anti-parallel
Strand 6
B
176 183anti-parallel
Strand 7
B
166 173anti-parallel
Strand 8
B
157 163anti-parallel
Strand 9
B
203 208anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 71first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
A
245 251anti-parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
224 229anti-parallel
Strand 8
A
135 140anti-parallel
Strand 9
A
196 199anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
203 208first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
167 173anti-parallel
Strand 4
A
176 182anti-parallel
Strand 5
C
110 117anti-parallel
Strand 6
C
98 104anti-parallel
Strand 7
C
87 92anti-parallel
Strand 8
C
2 6anti-parallel
Strand 9
C
59 62anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
59 62first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
98 104anti-parallel
Strand 5
B
110 117anti-parallel
Strand 6
C
176 183anti-parallel
Strand 7
C
166 173anti-parallel
Strand 8
C
157 162anti-parallel
Strand 9
C
203 208anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 71first strand
Strand 2
B
25 31anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
46 53anti-parallel
Strand 5
B
245 251anti-parallel
Strand 6
B
235 241anti-parallel
Strand 7
B
224 229anti-parallel
Strand 8
B
135 140anti-parallel
Strand 9
B
196 199anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 71first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
34 40anti-parallel
Strand 4
C
47 53anti-parallel
Strand 5
C
245 251anti-parallel
Strand 6
C
235 241anti-parallel
Strand 7
C
224 229anti-parallel
Strand 8
C
135 140anti-parallel
Strand 9
C
196 199anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il