Analysis of interatomic Contacts of Structural Units in PDB entry:
5E4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E4E entry

There are 3 chains in PDB entry 5E4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ASN 113
B
 MET 1TRP 196
C
 GLN 32ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5E4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 21Right-handed alpha
Helix 2
AA2
A
27 31Right-handed 310
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
60 68Right-handed alpha
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
92 110Right-handed alpha
Helix 7
AA7
B
127 130Right-handed 310
Helix 8
AA8
C
254 256Right-handed 310
Helix 9
AA9
C
284 288Right-handed 310
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There are 10 sheets in PDB entry 5E4E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
89 91anti-parallel
Strand 3
C
74 79anti-parallel
Strand 4
C
65 70anti-parallel
Strand 5
C
94 101anti-parallel
Strand 6
C
113 118anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
58 64anti-parallel
Strand 4
B
52 53anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
74 80anti-parallel
Strand 4
B
83 90anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 106first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
158 161anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
132 139anti-parallel
Strand 3
B
172 180anti-parallel
Strand 4
B
194 196anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 43first strand
Strand 2
C
47 53anti-parallel
Strand 3
C
83 87anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 179first strand
Strand 2
C
182 188anti-parallel
Strand 3
C
141 147anti-parallel
Strand 4
C
130 137anti-parallel
Strand 5
C
226 227parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 173first strand
Strand 2
C
158 163anti-parallel
Strand 3
C
201 208anti-parallel
Strand 4
C
216 221anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 239first strand
Strand 2
C
242 248anti-parallel
Strand 3
C
294 299anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
272 277first strand
Strand 2
C
258 266anti-parallel
Strand 3
C
308 316anti-parallel
Strand 4
C
334 336anti-parallel
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