Analysis of interatomic Contacts of Structural Units in PDB entry:
5E5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E5R entry

There are 4 chains in PDB entry 5E5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 56	SER 320
B	LYS 125	ALA 316
C	ASP 57	SER 320
D	PHE 124	ALA 316

There are 24 helices in PDB entry 5E5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	69	Right-handed 310
Helix 2	AA2	A	70	75	Right-handed alpha
Helix 3	AA3	A	76	80	Right-handed 310
Helix 4	AA4	A	89	93	Right-handed 310
Helix 5	AA5	A	186	193	Right-handed alpha
Helix 6	AA6	A	211	213	Right-handed 310
Helix 7	AA7	A	214	224	Right-handed alpha
Helix 8	AA8	A	237	242	Right-handed 310
Helix 9	AA9	A	277	286	Right-handed alpha
Helix 10	AB1	B	187	191	Right-handed 310
Helix 11	AB2	B	277	279	Right-handed 310
Helix 12	AB3	B	288	292	Right-handed 310
Helix 13	AB4	C	63	69	Right-handed 310
Helix 14	AB5	C	70	75	Right-handed alpha
Helix 15	AB6	C	76	80	Right-handed 310
Helix 16	AB7	C	89	93	Right-handed 310
Helix 17	AB8	C	186	193	Right-handed alpha
Helix 18	AB9	C	214	222	Right-handed alpha
Helix 19	AC1	C	237	242	Right-handed 310
Helix 20	AC2	C	277	282	Right-handed alpha
Helix 21	AC3	C	283	286	Right-handed 310
Helix 22	AC4	D	187	191	Right-handed 310
Helix 23	AC5	D	277	279	Right-handed 310
Helix 24	AC6	D	288	292	Right-handed 310

There are 15 sheets in PDB entry 5E5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	133	135	anti-parallel
Strand 3	A	143	152	anti-parallel
Strand 4	A	124	127	anti-parallel
Strand 5	A	116	119	anti-parallel
Strand 6	A	230	232	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	133	135	anti-parallel
Strand 3	A	143	152	anti-parallel
Strand 4	A	172	179	anti-parallel
Strand 5	A	197	206	anti-parallel
Strand 6	A	265	276	parallel
Strand 7	A	249	254	anti-parallel
Strand 8	A	318	320	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	293	first strand
Strand 2	A	296	301	anti-parallel
Strand 3	B	140	142	anti-parallel
Strand 4	B	181	183	anti-parallel
Strand 5	B	172	174	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	212	216	parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	153	159	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	212	216	parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	206	208	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	232	first strand
Strand 2	B	245	254	anti-parallel
Strand 3	B	281	284	anti-parallel
Strand 4	B	273	276	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	304	315	parallel
Strand 3	B	293	301	anti-parallel
Strand 4	B	258	263	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	164	165	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	133	136	anti-parallel
Strand 3	C	139	152	anti-parallel
Strand 4	C	172	179	anti-parallel
Strand 5	C	197	206	anti-parallel
Strand 6	C	274	276	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	232	first strand
Strand 2	C	116	119	anti-parallel
Strand 3	C	124	127	anti-parallel
Strand 4	C	139	152	anti-parallel
Strand 5	C	172	179	anti-parallel
Strand 6	C	197	206	anti-parallel
Strand 7	C	265	270	parallel
Strand 8	C	249	254	anti-parallel
Strand 9	C	318	319	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	293	first strand
Strand 2	C	296	301	anti-parallel
Strand 3	D	140	142	anti-parallel
Strand 4	D	181	183	anti-parallel
Strand 5	D	172	174	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	212	216	parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	153	159	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	212	216	parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	207	208	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	232	first strand
Strand 2	D	245	254	anti-parallel
Strand 3	D	281	284	anti-parallel
Strand 4	D	274	276	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	239	first strand
Strand 2	D	304	314	parallel
Strand 3	D	293	301	anti-parallel
Strand 4	D	258	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E5R