Analysis of interatomic Contacts of Structural Units in PDB entry:
5E6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E6J entry

There are 8 chains in PDB entry 5E6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 4HIS 320
B
MET 1GLY 47
B
GLN 49GLY 75
C
MET 1GLY 75
D
LYS 4LYS 316
E
MET 1GLY 47
E
GLN 49GLY 75
F
MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5E6J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
62 74Right-handed alpha
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
111 123Right-handed alpha
Helix 6
AA6
A
130 143Right-handed alpha
Helix 7
AA7
A
145 156Right-handed alpha
Helix 8
AA8
A
165 175Right-handed alpha
Helix 9
AA9
A
203 205Right-handed 310
Helix 10
AB1
A
214 220Right-handed alpha
Helix 11
AB2
A
255 259Right-handed 310
Helix 12
AB3
B
22 30Right-handed alpha
Helix 13
AB4
B
30 35Right-handed alpha
Helix 14
AB5
B
37 39Right-handed 310
Helix 15
AB6
C
22 35Right-handed alpha
Helix 16
AB7
D
27 33Right-handed alpha
Helix 17
AB8
D
48 52Right-handed 310
Helix 18
AB9
D
62 74Right-handed alpha
Helix 19
AC1
D
79 92Right-handed alpha
Helix 20
AC2
D
111 122Right-handed alpha
Helix 21
AC3
D
130 143Right-handed alpha
Helix 22
AC4
D
145 156Right-handed alpha
Helix 23
AC5
D
165 175Right-handed alpha
Helix 24
AC6
D
203 205Right-handed 310
Helix 25
AC7
D
213 220Right-handed alpha
Helix 26
AC8
E
22 30Right-handed alpha
Helix 27
AC9
E
30 35Right-handed alpha
Helix 28
AD1
F
22 35Right-handed alpha
Helix 29
AD2
F
37 39Right-handed 310
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There are 10 sheets in PDB entry 5E6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
40 41first strand
Strand 2
A
35 37anti-parallel
Strand 3
A
55 58anti-parallel
Strand 4
A
5 11parallel
Strand 5
A
17 23anti-parallel
Strand 6
F
11 16parallel
Strand 7
F
2 7anti-parallel
Strand 8
F
66 71parallel
Strand 9
F
41 45anti-parallel
Strand 10
F
48 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
195 201first strand
Strand 2
A
183 189anti-parallel
Strand 3
A
230 239anti-parallel
Strand 4
A
221 224anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 209first strand
Strand 2
A
242 254parallel
Strand 3
A
297 307anti-parallel
Strand 4
A
261 267anti-parallel
Strand 5
A
272 279anti-parallel
Strand 6
A
283 287anti-parallel
Strand 7
A
290 294anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
48 49first strand
Strand 2
C
41 45anti-parallel
Strand 3
C
66 71anti-parallel
Strand 4
C
2 7parallel
Strand 5
C
11 16anti-parallel
Strand 6
D
17 23parallel
Strand 7
D
5 11anti-parallel
Strand 8
D
55 58parallel
Strand 9
D
35 37anti-parallel
Strand 10
D
40 41anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
98 99first strand
Strand 2
D
102 103anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
196 201first strand
Strand 2
D
183 189anti-parallel
Strand 3
D
230 239anti-parallel
Strand 4
D
221 224anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
196 201first strand
Strand 2
D
183 189anti-parallel
Strand 3
D
230 239anti-parallel
Strand 4
D
310 312anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
207 209first strand
Strand 2
D
242 254parallel
Strand 3
D
297 307anti-parallel
Strand 4
D
261 268anti-parallel
Strand 5
D
271 279anti-parallel
Strand 6
D
283 287anti-parallel
Strand 7
D
290 294anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
12 16first strand
Strand 2
E
2 6anti-parallel
Strand 3
E
66 71parallel
Strand 4
E
41 45anti-parallel
Strand 5
E
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il