Analysis of interatomic Contacts of Structural Units in PDB entry:
5E8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E8W entry

There is 1 chain in PDB entry 5E8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 199ILE 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5E8W. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
201 203Right-handed 310
Helix 2
AA2
A
235 237Right-handed 310
Helix 3
AA3
A
238 250Right-handed alpha
Helix 4
AA4
A
287 295Right-handed alpha
Helix 5
AA5
A
298 318Right-handed alpha
Helix 6
AA6
A
335 337Right-handed 310
Helix 7
AA7
A
375 379Right-handed 310
Helix 8
AA8
A
380 385Right-handed alpha
Helix 9
AA9
A
393 414Right-handed alpha
Helix 10
AB1
A
437 446Right-handed alpha
Helix 11
AB2
A
455 460Right-handed 310
Helix 12
AB3
A
461 475Right-handed alpha
Helix 13
AB4
A
478 482Right-handed 310
Helix 14
AB5
A
484 500Right-handed alpha
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There are 3 sheets in PDB entry 5E8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 213first strand
Strand 2
A
218 224anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
274 281anti-parallel
Strand 5
A
262 269anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
328 330first strand
Strand 2
A
356 359anti-parallel
Strand 3
A
364 365anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
339 341first strand
Strand 2
A
347 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il