Analysis of interatomic Contacts of Structural Units in PDB entry:
5E95


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E95 entry

There are 2 chains in PDB entry 5E95 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
SER 2THR 95
A
GLY -1HIS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5E95. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
65 75Right-handed alpha
Helix 3
AA3
A
86 92Right-handed alpha
Helix 4
AA4
A
92 105Right-handed alpha
Helix 5
AA5
A
126 138Right-handed alpha
Helix 6
AA6
A
151 165Right-handed alpha
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There are 3 sheets in PDB entry 5E95. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 14first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
56 59anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 51first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
67 78anti-parallel
Strand 4
B
89 94anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 51first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
67 78anti-parallel
Strand 4
B
81 84anti-parallel
Strand 5
A
141 144anti-parallel
Strand 6
A
111 116parallel
Strand 7
A
77 83parallel
Strand 8
A
3 9parallel
Strand 9
A
49 57parallel
Strand 10
A
40 46anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il