Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E9W entry

There are 4 chains in PDB entry 5E9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 167GLN 476
B
 ARG 168GLN 476
C
 SER 167GLN 476
D
 SER 167GLN 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5E9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 194Right-handed alpha
Helix 2
AA2
A
211 218Right-handed alpha
Helix 3
AA3
A
229 245Right-handed alpha
Helix 4
AA4
A
266 270Right-handed 310
Helix 5
AA5
A
286 292Right-handed 310
Helix 6
AA6
A
293 306Right-handed alpha
Helix 7
AA7
A
320 331Right-handed alpha
Helix 8
AA8
A
374 383Right-handed alpha
Helix 9
AA9
A
395 403Right-handed alpha
Helix 10
AB1
A
405 415Right-handed alpha
Helix 11
AB2
A
457 465Right-handed alpha
Helix 12
AB3
B
169 194Right-handed alpha
Helix 13
AB4
B
211 218Right-handed alpha
Helix 14
AB5
B
229 245Right-handed alpha
Helix 15
AB6
B
266 270Right-handed 310
Helix 16
AB7
B
286 292Right-handed 310
Helix 17
AB8
B
293 306Right-handed alpha
Helix 18
AB9
B
320 331Right-handed alpha
Helix 19
AC1
B
374 383Right-handed alpha
Helix 20
AC2
B
395 403Right-handed alpha
Helix 21
AC3
B
405 415Right-handed alpha
Helix 22
AC4
B
457 465Right-handed alpha
Helix 23
AC5
C
169 195Right-handed alpha
Helix 24
AC6
C
211 218Right-handed alpha
Helix 25
AC7
C
229 245Right-handed alpha
Helix 26
AC8
C
266 270Right-handed 310
Helix 27
AC9
C
286 292Right-handed 310
Helix 28
AD1
C
293 306Right-handed alpha
Helix 29
AD2
C
320 331Right-handed alpha
Helix 30
AD3
C
374 384Right-handed alpha
Helix 31
AD4
C
395 403Right-handed alpha
Helix 32
AD5
C
405 416Right-handed alpha
Helix 33
AD6
C
457 465Right-handed alpha
Helix 34
AD7
D
169 195Right-handed alpha
Helix 35
AD8
D
211 218Right-handed alpha
Helix 36
AD9
D
229 245Right-handed alpha
Helix 37
AE1
D
266 270Right-handed 310
Helix 38
AE2
D
286 292Right-handed 310
Helix 39
AE3
D
293 306Right-handed alpha
Helix 40
AE4
D
320 331Right-handed alpha
Helix 41
AE5
D
374 383Right-handed alpha
Helix 42
AE6
D
395 403Right-handed alpha
Helix 43
AE7
D
405 415Right-handed alpha
Helix 44
AE8
D
457 465Right-handed alpha
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There are 8 sheets in PDB entry 5E9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 259first strand
Strand 2
A
222 227parallel
Strand 3
A
200 204parallel
Strand 4
A
278 284parallel
Strand 5
A
308 319parallel
Strand 6
A
467 474anti-parallel
Strand 7
A
387 394anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
341 345anti-parallel
Strand 3
A
357 362anti-parallel
Strand 4
A
368 371anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 259first strand
Strand 2
B
222 227parallel
Strand 3
B
200 204parallel
Strand 4
B
278 284parallel
Strand 5
B
308 319parallel
Strand 6
B
467 474anti-parallel
Strand 7
B
387 394anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
342 345anti-parallel
Strand 3
B
357 361anti-parallel
Strand 4
B
368 371anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
254 259first strand
Strand 2
C
222 227parallel
Strand 3
C
200 204parallel
Strand 4
C
278 284parallel
Strand 5
C
308 319parallel
Strand 6
C
467 474anti-parallel
Strand 7
C
387 394anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 337first strand
Strand 2
C
341 345anti-parallel
Strand 3
C
357 362anti-parallel
Strand 4
C
368 371anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
254 259first strand
Strand 2
D
222 227parallel
Strand 3
D
200 204parallel
Strand 4
D
278 284parallel
Strand 5
D
308 319parallel
Strand 6
D
467 474anti-parallel
Strand 7
D
387 394anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
335 337first strand
Strand 2
D
341 345anti-parallel
Strand 3
D
357 362anti-parallel
Strand 4
D
370 371anti-parallel
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