Analysis of interatomic Contacts of Structural Units in PDB entry:
5EDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EDV entry

There are 9 chains in PDB entry 5EDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 699	ASN 1011
B	CYS 699	SER 1066
C	LEU 3	MET 147
D	PRO 0	MET 147
E	MET 1	GLY 76
F	MET 1	GLY 76
G	MET 1	GLY 76
H	MET 1	GLY 76
I	PRO 0	ASP 29

There are 49 helices in PDB entry 5EDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	722	736	Right-handed alpha
Helix 2	AA2	A	738	742	Right-handed 310
Helix 3	AA3	A	759	773	Right-handed alpha
Helix 4	AA4	A	774	791	Right-handed alpha
Helix 5	AA5	A	833	837	Right-handed 310
Helix 6	AA6	A	840	852	Right-handed alpha
Helix 7	AA7	A	854	867	Right-handed alpha
Helix 8	AA8	A	930	935	Right-handed alpha
Helix 9	AA9	A	938	948	Right-handed alpha
Helix 10	AB1	A	998	1011	Right-handed alpha
Helix 11	AB2	B	722	736	Right-handed alpha
Helix 12	AB3	B	738	742	Right-handed 310
Helix 13	AB4	B	761	773	Right-handed alpha
Helix 14	AB5	B	774	791	Right-handed alpha
Helix 15	AB6	B	833	837	Right-handed 310
Helix 16	AB7	B	840	852	Right-handed alpha
Helix 17	AB8	B	852	867	Right-handed alpha
Helix 18	AB9	B	930	935	Right-handed alpha
Helix 19	AC1	B	938	948	Right-handed alpha
Helix 20	AC2	B	998	1014	Right-handed alpha
Helix 21	AC3	B	1022	1034	Right-handed alpha
Helix 22	AC4	B	1055	1061	Right-handed alpha
Helix 23	AC5	C	4	16	Right-handed alpha
Helix 24	AC6	C	86	90	Right-handed 310
Helix 25	AC7	C	98	112	Right-handed alpha
Helix 26	AC8	C	120	130	Right-handed alpha
Helix 27	AC9	C	130	146	Right-handed alpha
Helix 28	AD1	D	1	16	Right-handed alpha
Helix 29	AD2	D	86	90	Right-handed 310
Helix 30	AD3	D	98	112	Right-handed alpha
Helix 31	AD4	D	120	130	Right-handed alpha
Helix 32	AD5	D	130	146	Right-handed alpha
Helix 33	AD6	E	22	35	Right-handed alpha
Helix 34	AD7	E	37	39	Right-handed 310
Helix 35	AD8	E	56	60	Right-handed 310
Helix 36	AD9	F	22	35	Right-handed alpha
Helix 37	AE1	F	37	39	Right-handed 310
Helix 38	AE2	F	56	60	Right-handed 310
Helix 39	AE3	G	22	35	Right-handed alpha
Helix 40	AE4	G	37	39	Right-handed 310
Helix 41	AE5	G	56	60	Right-handed 310
Helix 42	AE6	H	22	35	Right-handed alpha
Helix 43	AE7	H	37	39	Right-handed 310
Helix 44	AE8	H	56	60	Right-handed 310
Helix 45	AE9	I	1	16	Right-handed alpha
Helix 46	AF1	I	86	90	Right-handed 310
Helix 47	AF2	I	98	112	Right-handed alpha
Helix 48	AF3	I	120	130	Right-handed alpha
Helix 49	AF4	I	130	146	Right-handed alpha

There are 17 sheets in PDB entry 5EDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	798	first strand
Strand 2	A	805	809	anti-parallel
Strand 3	G	66	74	parallel
Strand 4	G	2	7	parallel
Strand 5	G	12	16	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	798	first strand
Strand 2	A	805	809	anti-parallel
Strand 3	G	66	74	parallel
Strand 4	G	41	45	anti-parallel
Strand 5	G	48	49	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	814	816	first strand
Strand 2	A	823	825	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	870	first strand
Strand 2	A	877	880	anti-parallel
Strand 3	E	66	73	parallel
Strand 4	E	2	7	parallel
Strand 5	E	12	16	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	870	first strand
Strand 2	A	877	880	anti-parallel
Strand 3	E	66	73	parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	889	first strand
Strand 2	A	896	898	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	972	977	first strand
Strand 2	A	980	985	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	798	first strand
Strand 2	B	805	809	anti-parallel
Strand 3	H	66	74	parallel
Strand 4	H	2	7	parallel
Strand 5	H	12	16	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	798	first strand
Strand 2	B	805	809	anti-parallel
Strand 3	H	66	74	parallel
Strand 4	H	41	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	816	first strand
Strand 2	B	823	825	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	868	870	first strand
Strand 2	B	877	881	anti-parallel
Strand 3	F	66	74	parallel
Strand 4	F	2	7	parallel
Strand 5	F	12	16	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	868	870	first strand
Strand 2	B	877	881	anti-parallel
Strand 3	F	66	74	parallel
Strand 4	F	41	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	889	first strand
Strand 2	B	896	898	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	972	977	first strand
Strand 2	B	980	985	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	49	55	anti-parallel
Strand 4	C	66	69	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	49	55	anti-parallel
Strand 4	D	66	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	25	first strand
Strand 2	I	32	38	anti-parallel
Strand 3	I	49	55	anti-parallel
Strand 4	I	66	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EDV