Analysis of interatomic Contacts of Structural Units in PDB entry:
5EEQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EEQ entry

There are 6 chains in PDB entry 5EEQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 426THR 528
B
 ALA 424CYS 527
L
 SER 1ASN 7
L
 PHE 9PRO 10
M
 SER 1ASN 7
M
 PHE 9PRO 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 5EEQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
437 448Right-handed alpha
Helix 2
AA2
A
504 513Right-handed alpha
Helix 3
AA3
B
424 429Right-handed 310
Helix 4
AA4
B
437 448Right-handed alpha
Helix 5
AA5
B
504 513Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5EEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 494first strand
Strand 2
A
476 487anti-parallel
Strand 3
A
467 473anti-parallel
Strand 4
A
454 459anti-parallel
Strand 5
A
525 526parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 494first strand
Strand 2
B
476 487anti-parallel
Strand 3
B
467 473anti-parallel
Strand 4
B
454 459anti-parallel
Strand 5
B
525 526parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il