Analysis of interatomic Contacts of Structural Units in PDB entry:
5EGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EGV entry

There are 4 chains in PDB entry 5EGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 304ARG 548
B
 LEU 308LEU 549
C
 HIS 687ASP 696
D
 LYS 688ASP 696
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5EGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 322Right-handed alpha
Helix 2
AA2
A
338 363Right-handed alpha
Helix 3
AA3
A
371 395Right-handed alpha
Helix 4
AA4
A
412 416Right-handed alpha
Helix 5
AA5
A
420 439Right-handed alpha
Helix 6
AA6
A
441 456Right-handed alpha
Helix 7
AA7
A
472 493Right-handed alpha
Helix 8
AA8
A
496 532Right-handed alpha
Helix 9
AA9
A
537 543Right-handed alpha
Helix 10
AB1
A
544 548Right-handed 310
Helix 11
AB2
B
311 322Right-handed alpha
Helix 12
AB3
B
343 361Right-handed alpha
Helix 13
AB4
B
362 364Right-handed 310
Helix 14
AB5
B
371 395Right-handed alpha
Helix 15
AB6
B
396 398Right-handed 310
Helix 16
AB7
B
411 416Right-handed alpha
Helix 17
AB8
B
420 439Right-handed alpha
Helix 18
AB9
B
441 456Right-handed alpha
Helix 19
AC1
B
473 493Right-handed alpha
Helix 20
AC2
B
496 531Right-handed alpha
Helix 21
AC3
B
537 545Right-handed alpha
Helix 22
AC4
C
688 694Right-handed alpha
Helix 23
AC5
D
689 694Right-handed alpha
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There are 2 sheets in PDB entry 5EGV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 405first strand
Strand 2
B
408 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il