Analysis of interatomic Contacts of Structural Units in PDB entry:
5EKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EKO entry

There is 1 chain in PDB entry 5EKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PRO 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5EKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 79Right-handed alpha
Helix 2
AA2
A
114 118Right-handed alpha
Helix 3
AA3
A
123 144Right-handed alpha
Helix 4
AA4
A
152 154Right-handed 310
Helix 5
AA5
A
190 196Right-handed alpha
Helix 6
AA6
A
203 219Right-handed alpha
Helix 7
AA7
A
227 240Right-handed alpha
Helix 8
AA8
A
243 250Right-handed alpha
Helix 9
AA9
A
252 262Right-handed alpha
Helix 10
AB1
A
269 274Right-handed alpha
Helix 11
AB2
A
278 289Right-handed alpha
Helix 12
AB3
A
298 304Right-handed alpha
Helix 13
AB4
A
305 309Right-handed 310
Helix 14
AB5
A
313 317Right-handed 310
Helix 15
AB6
A
334 349Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5EKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
17 22anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 33first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
89 91anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
164 166anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il