Analysis of interatomic Contacts of Structural Units in PDB entry:
5ELM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ELM entry

There are 4 chains in PDB entry 5ELM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 235
B
 MET 1HIS 235
C
 MET 1HIS 235
D
 MET 1HIS 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5ELM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 31Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
A
56 74Right-handed alpha
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
89 97Right-handed alpha
Helix 6
AA6
A
103 115Right-handed alpha
Helix 7
AA7
A
125 131Right-handed alpha
Helix 8
AA8
A
132 143Right-handed alpha
Helix 9
AA9
A
150 164Right-handed alpha
Helix 10
AB1
A
171 188Right-handed alpha
Helix 11
AB2
A
197 204Right-handed alpha
Helix 12
AB3
A
205 209Right-handed 310
Helix 13
AB4
A
216 229Right-handed alpha
Helix 14
AB5
A
231 235Right-handed 310
Helix 15
AB6
B
11 31Right-handed alpha
Helix 16
AB7
B
44 55Right-handed alpha
Helix 17
AB8
B
56 74Right-handed alpha
Helix 18
AB9
B
84 88Right-handed 310
Helix 19
AC1
B
89 97Right-handed alpha
Helix 20
AC2
B
103 115Right-handed alpha
Helix 21
AC3
B
125 131Right-handed alpha
Helix 22
AC4
B
131 143Right-handed alpha
Helix 23
AC5
B
150 164Right-handed alpha
Helix 24
AC6
B
165 168Right-handed 310
Helix 25
AC7
B
171 188Right-handed alpha
Helix 26
AC8
B
205 209Right-handed 310
Helix 27
AC9
B
216 229Right-handed alpha
Helix 28
AD1
B
231 235Right-handed 310
Helix 29
AD2
C
11 31Right-handed alpha
Helix 30
AD3
C
44 55Right-handed alpha
Helix 31
AD4
C
56 74Right-handed alpha
Helix 32
AD5
C
84 88Right-handed 310
Helix 33
AD6
C
89 97Right-handed alpha
Helix 34
AD7
C
103 115Right-handed alpha
Helix 35
AD8
C
125 131Right-handed alpha
Helix 36
AD9
C
131 143Right-handed alpha
Helix 37
AE1
C
150 152Right-handed 310
Helix 38
AE2
C
153 164Right-handed alpha
Helix 39
AE3
C
165 168Right-handed 310
Helix 40
AE4
C
171 186Right-handed alpha
Helix 41
AE5
C
199 204Right-handed alpha
Helix 42
AE6
C
216 230Right-handed alpha
Helix 43
AE7
C
231 235Right-handed 310
Helix 44
AE8
D
11 31Right-handed alpha
Helix 45
AE9
D
44 54Right-handed alpha
Helix 46
AF1
D
56 74Right-handed alpha
Helix 47
AF2
D
84 88Right-handed 310
Helix 48
AF3
D
89 97Right-handed alpha
Helix 49
AF4
D
103 115Right-handed alpha
Helix 50
AF5
D
125 131Right-handed alpha
Helix 51
AF6
D
134 143Right-handed alpha
Helix 52
AF7
D
150 164Right-handed alpha
Helix 53
AF8
D
165 168Right-handed 310
Helix 54
AF9
D
171 188Right-handed alpha
Helix 55
AG1
D
199 204Right-handed alpha
Helix 56
AG2
D
205 209Right-handed 310
Helix 57
AG3
D
216 229Right-handed alpha
Helix 58
AG4
D
231 235Right-handed 310
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There are 6 sheets in PDB entry 5ELM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
4 8parallel
Strand 3
A
38 42parallel
Strand 4
B
38 42anti-parallel
Strand 5
B
4 8parallel
Strand 6
B
78 81parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
119 123parallel
Strand 3
A
193 195parallel
Strand 4
A
213 215parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
119 123parallel
Strand 3
B
193 195parallel
Strand 4
B
213 215parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 81first strand
Strand 2
C
4 8parallel
Strand 3
C
38 42parallel
Strand 4
D
38 42anti-parallel
Strand 5
D
4 8parallel
Strand 6
D
78 81parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 147first strand
Strand 2
C
119 123parallel
Strand 3
C
193 195parallel
Strand 4
C
213 215parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 147first strand
Strand 2
D
119 123parallel
Strand 3
D
193 195parallel
Strand 4
D
213 215parallel
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