Analysis of interatomic Contacts of Structural Units in PDB entry:
5EWM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EWM entry

There are 4 chains in PDB entry 5EWM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	THR 407
B	PRO 32	ARG 393
C	ASP 23	THR 407
D	PRO 32	ALA 263

There are 53 helices in PDB entry 5EWM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	104	114	Right-handed alpha
Helix 5	AA5	A	125	130	Right-handed 310
Helix 6	AA6	A	143	146	Right-handed 310
Helix 7	AA7	A	147	159	Right-handed alpha
Helix 8	AA8	A	170	185	Right-handed alpha
Helix 9	AA9	A	225	235	Right-handed alpha
Helix 10	AB1	A	245	259	Right-handed alpha
Helix 11	AB2	A	272	275	Right-handed 310
Helix 12	AB3	A	276	283	Right-handed alpha
Helix 13	AB4	A	297	317	Right-handed alpha
Helix 14	AB5	A	338	348	Right-handed alpha
Helix 15	AB6	B	46	51	Right-handed alpha
Helix 16	AB7	B	77	92	Right-handed alpha
Helix 17	AB8	B	106	120	Right-handed alpha
Helix 18	AB9	B	128	132	Right-handed 310
Helix 19	AC1	B	149	165	Right-handed alpha
Helix 20	AC2	B	178	192	Right-handed alpha
Helix 21	AC3	B	214	222	Right-handed alpha
Helix 22	AC4	B	233	247	Right-handed alpha
Helix 23	AC5	B	259	264	Right-handed alpha
Helix 24	AC6	B	288	312	Right-handed alpha
Helix 25	AC7	B	323	328	Right-handed alpha
Helix 26	AC8	B	329	331	Right-handed 310
Helix 27	AC9	B	335	340	Right-handed alpha
Helix 28	AD1	C	35	54	Right-handed alpha
Helix 29	AD2	C	70	82	Right-handed alpha
Helix 30	AD3	C	83	85	Right-handed 310
Helix 31	AD4	C	104	114	Right-handed alpha
Helix 32	AD5	C	125	130	Right-handed 310
Helix 33	AD6	C	143	146	Right-handed 310
Helix 34	AD7	C	147	159	Right-handed alpha
Helix 35	AD8	C	170	185	Right-handed alpha
Helix 36	AD9	C	225	235	Right-handed alpha
Helix 37	AE1	C	245	259	Right-handed alpha
Helix 38	AE2	C	272	275	Right-handed 310
Helix 39	AE3	C	276	283	Right-handed alpha
Helix 40	AE4	C	297	317	Right-handed alpha
Helix 41	AE5	C	338	348	Right-handed alpha
Helix 42	AE6	D	46	52	Right-handed alpha
Helix 43	AE7	D	77	92	Right-handed alpha
Helix 44	AE8	D	106	120	Right-handed alpha
Helix 45	AE9	D	128	131	Right-handed 310
Helix 46	AF1	D	149	165	Right-handed alpha
Helix 47	AF2	D	178	192	Right-handed alpha
Helix 48	AF3	D	214	221	Right-handed alpha
Helix 49	AF4	D	233	247	Right-handed alpha
Helix 50	AF5	D	259	264	Right-handed alpha
Helix 51	AF6	D	288	312	Right-handed alpha
Helix 52	AF7	D	324	331	Right-handed 310
Helix 53	AF8	D	335	340	Right-handed alpha

There are 13 sheets in PDB entry 5EWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	25	33	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	218	first strand
Strand 2	A	162	168	parallel
Strand 3	A	239	243	parallel
Strand 4	A	267	269	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	292	first strand
Strand 2	A	372	378	anti-parallel
Strand 3	A	381	388	anti-parallel
Strand 4	A	393	395	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	354	first strand
Strand 2	A	357	361	anti-parallel
Strand 3	A	367	368	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	73	first strand
Strand 2	B	34	42	parallel
Strand 3	B	94	100	parallel
Strand 4	B	123	127	parallel
Strand 5	B	143	145	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	168	173	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	379	anti-parallel
Strand 8	B	384	386	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	347	348	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	25	33	parallel
Strand 3	C	87	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	218	first strand
Strand 2	C	162	168	parallel
Strand 3	C	239	243	parallel
Strand 4	C	267	269	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	292	first strand
Strand 2	C	372	378	anti-parallel
Strand 3	C	381	388	anti-parallel
Strand 4	C	393	395	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	354	first strand
Strand 2	C	357	361	anti-parallel
Strand 3	C	367	368	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	73	first strand
Strand 2	D	34	42	parallel
Strand 3	D	94	100	parallel
Strand 4	D	123	127	parallel
Strand 5	D	143	145	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	205	first strand
Strand 2	D	168	174	parallel
Strand 3	D	227	231	parallel
Strand 4	D	255	258	parallel
Strand 5	D	278	282	parallel
Strand 6	D	362	367	anti-parallel
Strand 7	D	373	379	anti-parallel
Strand 8	D	384	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EWM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EWM