Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F1B entry

There are 3 chains in PDB entry 5F1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 31GLN 188
B
 PRO 509GLY 598
C
 LEU 18THR 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5F1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 61Right-handed 310
Helix 2
AA2
A
78 83Right-handed alpha
Helix 3
AA3
B
538 541Right-handed 310
Helix 4
AA4
B
551 576Right-handed alpha
Helix 5
AA5
B
583 596Right-handed alpha
Helix 6
AA6
C
19 26Right-handed alpha
Helix 7
AA7
C
60 63Right-handed 310
Helix 8
AA8
C
64 80Right-handed alpha
Helix 9
AA9
C
91 96Right-handed alpha
Helix 10
AB1
C
111 117Right-handed 310
Helix 11
AB2
C
119 124Right-handed alpha
Helix 12
AB3
C
136 145Right-handed alpha
Helix 13
AB4
C
170 174Right-handed alpha
Helix 14
AB5
C
182 186Right-handed 310
Helix 15
AB6
C
201 221Right-handed alpha
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There are 9 sheets in PDB entry 5F1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
63 69anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
159 161anti-parallel
Strand 5
A
165 167anti-parallel
Strand 6
A
96 98anti-parallel
Strand 7
B
580 581parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
151 154anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
B
515 520anti-parallel
Strand 3
B
543 548anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 114first strand
Strand 2
A
135 144parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 176first strand
Strand 2
C
188 196anti-parallel
Strand 3
C
31 39anti-parallel
Strand 4
C
228 230anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
57 59anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 85first strand
Strand 2
C
88 90anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 128first strand
Strand 2
C
133 135anti-parallel
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