Analysis of interatomic Contacts of Structural Units in PDB entry:
5F2R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F2R entry

There are 2 chains in PDB entry 5F2R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 27	GLY 407
B	VAL 27	SER 406

There are 33 helices in PDB entry 5F2R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	82	Right-handed alpha
Helix 2	AA2	A	87	91	Right-handed 310
Helix 3	AA3	A	95	98	Right-handed 310
Helix 4	AA4	A	105	112	Right-handed alpha
Helix 5	AA5	A	141	162	Right-handed alpha
Helix 6	AA6	A	177	191	Right-handed alpha
Helix 7	AA7	A	201	209	Right-handed alpha
Helix 8	AA8	A	254	275	Right-handed alpha
Helix 9	AA9	A	277	280	Right-handed 310
Helix 10	AB1	A	281	299	Right-handed alpha
Helix 11	AB2	A	324	338	Right-handed alpha
Helix 12	AB3	A	338	349	Right-handed alpha
Helix 13	AB4	A	352	356	Right-handed 310
Helix 14	AB5	A	363	367	Right-handed 310
Helix 15	AB6	A	368	379	Right-handed alpha
Helix 16	AB7	A	392	407	Right-handed alpha
Helix 17	AB8	B	77	82	Right-handed alpha
Helix 18	AB9	B	87	89	Right-handed 310
Helix 19	AC1	B	95	98	Right-handed 310
Helix 20	AC2	B	105	112	Right-handed alpha
Helix 21	AC3	B	113	115	Right-handed 310
Helix 22	AC4	B	141	162	Right-handed alpha
Helix 23	AC5	B	177	191	Right-handed alpha
Helix 24	AC6	B	201	209	Right-handed alpha
Helix 25	AC7	B	254	275	Right-handed alpha
Helix 26	AC8	B	277	280	Right-handed 310
Helix 27	AC9	B	281	299	Right-handed alpha
Helix 28	AD1	B	324	338	Right-handed alpha
Helix 29	AD2	B	338	349	Right-handed alpha
Helix 30	AD3	B	352	356	Right-handed 310
Helix 31	AD4	B	363	367	Right-handed 310
Helix 32	AD5	B	368	379	Right-handed alpha
Helix 33	AD6	B	392	406	Right-handed alpha

There are 12 sheets in PDB entry 5F2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	39	46	anti-parallel
Strand 3	A	62	63	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	39	46	anti-parallel
Strand 3	A	31	34	anti-parallel
Strand 4	A	167	172	parallel
Strand 5	A	194	200	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	65	68	anti-parallel
Strand 3	A	92	93	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	125	131	anti-parallel
Strand 3	A	137	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	250	first strand
Strand 2	A	230	238	anti-parallel
Strand 3	A	218	225	anti-parallel
Strand 4	A	358	362	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	313	first strand
Strand 2	A	316	323	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	39	46	anti-parallel
Strand 3	B	62	63	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	39	46	anti-parallel
Strand 3	B	31	34	anti-parallel
Strand 4	B	167	172	parallel
Strand 5	B	194	200	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	65	68	anti-parallel
Strand 3	B	91	93	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	125	133	anti-parallel
Strand 3	B	136	140	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	250	first strand
Strand 2	B	230	238	anti-parallel
Strand 3	B	218	225	anti-parallel
Strand 4	B	358	362	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	313	first strand
Strand 2	B	316	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F2R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F2R